RetrogeneDB ID:

retro_pvam_1364

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_6985:67234..67640(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS4X
Ensembl ID:ENSPVAG00000012882
Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]


Retrocopy-Parental alignment summary:






>retro_pvam_1364
ATGGCTTATGGTCCTAAGAAACATCTGAAGTGTGTAGCAGCTCCAGAGCATTGAATACTGGATGAACTGGCAAATATATT
TGCTCCTTGTCCATCTACTGATTCTCACAAGCTGAGAGAATATCTCCCTGTTATCCTTTTCCTAAGGAACAGACTTAAGT
ATGCCAGACAGAAGATAAAATAAAAGAGATCTACATATGGTTGTTCATTAAGATTGATAGCAAGGTCTGAACTAATATAA
TCTACCCTGATGGTTTTATGGATGGCATCAGCATTGACAAGACCAGAAAGAATTCCTGTCTGATCTATGACACCAAGGAT
TGCTTTGCTGTTCATTGTATGACAGCTAAAGAGGCCACATGCAAGTTGTGCAAAGTGAGAAAGATTTTGTAGGCACAAAA
GGAATC

ORF - retro_pvam_1364 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.67 %
Parental protein coverage: 51.71 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYAL-TGDEVKKICMQRF
MA.GPKKHLK.VAAP.H..LD.L...FAP.PST..HKLRE.LP.I.FLRNRLKYA..T.D..K.I....F
RetrocopyMAYGPKKHLKCVAAPEH*ILDELANIFAPCPSTDSHKLREYLPVILFLRNRLKYAR<TEDKIKEIYIWLF
ParentalIKIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKI-FVGTKGI
IKID.KV.T...YP.GFMD.ISIDKT..N..L.YDTK..FAVH..T..EA..KLCKVRKI.FVGTKGI
RetrocopyIKIDSKV*TNIIYPDGFMDGISIDKTRKNSCLIYDTKDCFAVHCMTAKEATCKLCKVRKI<FVGTKGI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.