RetrogeneDB ID:

retro_pvam_135

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1559:411574..412161(+)
Located in intron of:ENSPVAG00000001967
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TSPAN1
Ensembl ID:ENSPVAG00000013681
Aliases:None
Description:tetraspanin 1 [Source:HGNC Symbol;Acc:20657]


Retrocopy-Parental alignment summary:






>retro_pvam_135
ATGCAGTGCTAGAGCTGTGCTAAGACCATGATGATCTTCTGAAATTTTCTTATCTTTCTGTGTGGTGCGGCCCTGCTGGC
AGTGGGCATCTGGGTGTCAGTCGATGGGCCATCCTTCCTAAAGATTTCTGGGCCACTGTCGTCCAGTGTCATGCAGTTTG
TCAATGTGGGCTATTTCCTCATTGCAACTGGTGCTGTGCTCTTTGCCCTTGGTTTCCTGAGCTGTTATGGTGCTCACACT
GAGAACAAGTGTGCCCTCATGATGTTCTTCTCCATCCTCCACCTCATCTTCACTGCTGAGGTTGCAGCTGCTGTGGTCGC
CCTGGTGTACGTAATGGCTGAGCGTTTCCTGACGTTGTTGGTAGTGCCCAGAAAGAAAGACTATCATTCTGAGAAGGACT
CCCCAGGTGTGGACACAAACCTAAAAGGGCTCAAGTGCTGTGGCTTCAAAAACTACATGGATTTGGAGGCTCTCTCCACC
TCTTATTAGAGAACCGTGTCTTTCCCCCATACTGCTGCTCTGATGATGCTGACAGCACAGCCAAGGAGCCTCGCGGCAAG
GAGAAGGCTGAGGACAAGGCTGCAGAG

ORF - retro_pvam_135 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.5 %
Parental protein coverage: 82.16 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMKCYSFVKNMMILFNFLIFLCGVALLAVGIWVSVDGSSFLKIFGPLSSSAMQFVNVGYFLIAAGALLFAL
M.C.S..K.MMI..NFLIFLCG.ALLAVGIWVSVDG.SFLKI.GPLSSS.MQFVNVGYFLIA.GA.LFAL
RetrocopyMQC*SCAKTMMIF*NFLIFLCGAALLAVGIWVSVDGPSFLKISGPLSSSVMQFVNVGYFLIATGAVLFAL
ParentalGFLSCYGAHTENKCALMTFFLLLLIIFIAEVAAAVVALVYTAMGEHFLTMLVVPTIKKDYGSQSDFTQVW
GFLSCYGAHTENKCALM.FF..L..IF.AEVAAAVVALVY..M.E.FLT.LVVP..KKDY.S..D...V.
RetrocopyGFLSCYGAHTENKCALMMFFSILHLIFTAEVAAAVVALVY-VMAERFLTLLVVPR-KKDYHSEKDSPGV-
ParentalNTTMKGLNCCGFNNYTDFE-GSPY-FLDNQVFPPYCCFDHVNDTVTEPCTKEKAENKAVQ
.T..KGL.CCGF.NY.D.E.GS....L.N.VFPPYCC.D....T..EP..KEKAE.KA..
RetrocopyDTNLKGLKCCGFKNYMDLE<GSLHLLLENRVFPPYCCSDDADSTAKEPRGKEKAEDKAAE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide