RetrogeneDB ID:

retro_pvam_130

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1540:430499..430871(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS25
Ensembl ID:ENSPVAG00000012492
Aliases:None
Description:ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]


Retrocopy-Parental alignment summary:






>retro_pvam_130
ATGCCACCCAAGAATGACAAGAAGAAGACAGATGCCAGAAATTCAACCAAGAAAGACAAAGACCCAGTGAACAAATCTGC
GAGCAAGGCAAAAAGGAAGAAATGATCCAAAGGCAAAGTTCAGGACAAGCTTAATAATCTAGTCTTGTTTGACAAAGTGA
CATATGACAAACTCTGTAAGGAAGTTCCCGACTATAACCTTATAACCCCAGCTGTTGTCTCTGAGAGACTGAAGATCTGA
GGTTCCTTGGCTAGGGTAGCCCTTCAGGAGCTCTTTAGTAAGGGACTTATTAAACTAGTTTCAAAGTAAAGAGCTCAAGT
AACACCAAGAAACACCAAGGGTGGAGATGCCCTAGCTGCTGGCGAAGATGCA

ORF - retro_pvam_130 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP
MPPK.DKKK.DA..S.KKDKDPVNKS..KAK.KK.SKGKV.DKLNNLVLFDK.TYDKLCKEVP.Y.LITP
RetrocopyMPPKNDKKKTDARNSTKKDKDPVNKSASKAKRKK*SKGKVQDKLNNLVLFDKVTYDKLCKEVPDYNLITP
ParentalAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
AVVSERLKI.GSLAR.ALQEL.SKGLIKLVSK.RAQV...RNTKGGDA.AAGEDA
RetrocopyAVVSERLKI*GSLARVALQELFSKGLIKLVSK*RAQVT-PRNTKGGDALAAGEDA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.