RetrogeneDB ID:

retro_pvam_1224

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_443:65291..66125(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRPS2
Ensembl ID:ENSPVAG00000009452
Aliases:None
Description:phosphoribosyl pyrophosphate synthetase 2 [Source:HGNC Symbol;Acc:9465]


Retrocopy-Parental alignment summary:






>retro_pvam_1224
AGCGTGGAAATTGGCGAGAGTGTGCGTGGAGAGGACGTCTACATAGTGCAGAGTGGTTGTGGAGAAATCAACGACAATCT
GATGGAGCTTTTGATCATGATTAACGCCTGCAAGATTGCTTCAGCCAGCCGGGTTACCGCAGTCATCCCATGCTTCCCTT
ACGCCCGGCAGGATAAGAAGGATAAGAGCCGGGCTCCAATCTCTGCTAAGCTTGTTGCAAATATGCTGTCTATAGCAGGC
GCGGATCATATCATCACCATGGACCTACATGCTTCTCAAATTCAGGGCTTTTTCGATATCCCAGTAGACAATTTGTATGC
AGAGCCAGCTGTCCTGAAATGGATAAAGGAGAATATCTCTGAATGGAGGAATTGCACTATTGTCTCACCAGATGCTGGTG
GAGCCAAGAGGGTGACCTCCATTGCAGACTGGTTGAATGTGGACTTTGCCTTGATTCACAAAGAACGGAAGAAGGCCAAT
GAAGTGGACCGCATGGTGCTAGTGGGAGATGTGAAGGACCGCGTGGCTATCCTTGTGGATGATATGGCTGACACTTGTGG
TACAATCTGCCTTGCAGCTGACAAACTTCTCTCAGCTGGAGCCACCAGAGTTTATGCGGTCTTGACTCATGGAATCTTTT
CTGGTCCAGCCATTACTCACATCAACAGTGCATGCGTTGAAGGAATAGTAGTTACCAATACCATACCTCAGGAGGATAAC
ATGAAACATTGCTCAAAAATACAGGTGATCGATATCTCCATGATTCTTGCAGAAGCCATCAGGAGAACTCACAATGGCGA
ATCTGTTTCCTACCTATTCAGCCATGTCCCTTTA

ORF - retro_pvam_1224 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.39 %
Parental protein coverage: 94.93 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSVEIGESVRGEDVYIIQSGCGEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKVRESRAPI
SVEIGESVRGEDVYI.QSGCGEINDNLMELLIMINACKIAS.SRVTAVIPCFPYARQDKKDK...SRAPI
RetrocopySVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDK---SRAPI
ParentalSAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWRNCIIVSPDAGGAKR
SAKLVANMLS.AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVL.WI.ENI.EWRNC.IVSPDAGGAKR
RetrocopySAKLVANMLSIAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENISEWRNCTIVSPDAGGAKR
ParentalVTSIADRLNVEFALIHKERKKANEVDRMVLVGDVNNRVAILVDDMADTCGTICHAADKLLSAGATKVYAI
VTSIAD.LNV.FALIHKERKKANEVDRMVLVGDV..RVAILVDDMADTCGTIC.AADKLLSAGAT.VYA.
RetrocopyVTSIADWLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICLAADKLLSAGATRVYAV
ParentalLTHGIFSGPAISRINNAAFEAVVVTNTIPQEEKMNHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP
LTHGIFSGPAI..IN.A..E..VVTNTIPQE..M.HCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP
RetrocopyLTHGIFSGPAITHINSACVEGIVVTNTIPQEDNMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP