RetrogeneDB ID:

retro_pvam_1086

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_27629:1831..2231(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C18orf21
Ensembl ID:ENSPVAG00000009174
Aliases:None
Description:chromosome 18 open reading frame 21 [Source:HGNC Symbol;Acc:28802]


Retrocopy-Parental alignment summary:






>retro_pvam_1086
GGAAACTATAAGATAGTTTTCTGGGCCAGGCCCGATATCTCCTATTCTAAAAGCACTTTTGAAGGAACATATTCTTACTA
TTTCCAATTGCTTGTTCTAGATAATTCTTGAGTGAACCTCAAACCAAAGCCCACACTGACATGCAAAATACAGAAACTTC
TTAATCAAGAAGAAATTAAACACTCAGTTTTAAAGAAGTAAAAATTGTGAAAAAGTACAAAGACTCCCAAAGTTTATTTT
TGATTACTTATAAACATGCAACAGAACAATTAAACATCATGGTAAAAGTAGCAGCTTTCTATCAGTATTGAAAAGCAATC
CTACCACTCCTACAAGTAAGCTTGGCCTGAAGACACTGAAGAGAAAGACTTTAAGTTCTGCAAACTTAAATCACAGTATA

ORF - retro_pvam_1086 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.5 %
Parental protein coverage: 60.81 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGQARYLLWAYSSTHDAKSTFEGTCPYCFQLLVLDNYRVRLKPKPKLTPRIQKLLNREARNYTLSFKEAKI
G......WA.......KSTFEGT..Y.FQLLVLDN..V.LKPKP.LT..IQKLLN.E........K..K.
RetrocopyGNYKIVFWARPDISYSKSTFEGTYSYYFQLLVLDNS*VNLKPKPTLTCKIQKLLNQEEIKHSV-LKK*KL
Parental-VEKYKDSKSVLLITCK-TCNRTVKHHGKSRSFLSALKSNPTTPTSKLSLKTPERKTLSSADLNHDV
.V.KYKDS.S..LIT.K.TCNRT.KHHGKS.SFLS.LKSNPTTPTSKL.LKT..RKTLSSA.LNH..
Retrocopy<VKKYKDSQSLFLITYK<TCNRTIKHHGKSSSFLSVLKSNPTTPTSKLGLKTLKRKTLSSANLNHSI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.