RetrogeneDB ID:

retro_pvam_1077

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_26876:674..1281(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSPVAG00000009423
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:HNRNPA3
Ensembl ID:ENSPVAG00000010380
Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]


Retrocopy-Parental alignment summary:






>retro_pvam_1077
GAGAATTCCCAGTTGTGTAAGCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGCCTGCGCGGCCACTTCGA
GGCCTTTGGGACTCTGACGGACTGCGTGGTGGTGGTGAATCCTCAGACCAAGCGCTCCCGTTGCTTTGGCTTCGTGACCT
ACTCCAATGTGGAGGAGGCCGATGCCGCCATGGCCGCCTCGCCCCATGCCGTGGACGGCAACACGGTGGAGCTGAAGCGG
GCGGTGTCCCGGGAGGATTCGGCGCGGCCCGGTGCCCACGCGAAGGTTAAGAAGCTCTTTGTCGGGGGCCTTAACGGAGA
CGTGGACCGAGGGCGACCTGATCGAGCACTTCTCGCAGTTTGGCACCGTGGAAAAGGCCGAGATTATTGCCGACAAGCAG
TCCGGCAAGAAGCGTGGCTTCGGCTTCGTGTATTTTCAGAATCACGACGCGGCAGACAAGGCCGCGGTGGTCAAGTTCCA
TCCGATCCAGGGCCATCGCGTGGAAGTGAAGAAGGCCGTACCCAAGGAGGATATCCACTCCGGTGGGGGTGGAGGCGGCT
CCCGGTCCTCCCGGGGCGGCCGAGGCGGCCGCGGGCGCGGCGGTGGT

ORF - retro_pvam_1077 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.25 %
Parental protein coverage: 53.95 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHK
E..QL.KLFIGGL...T....LR.HFE..GTLTDCVV...PQTKRSR.FGFVTYS.VEE.DAAM.A.PH.
RetrocopyENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHA
ParentalVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE-EYNLRDYFEKYGKIETIEVMEDRQSGKKRG
VDG..VE.KRAVSREDS..PGAH..VKK.FVGG...D...E..L...F...G..E..E...D.QSGKKRG
RetrocopyVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLNGDVD>EGDLIEHFSQFGTVEKAEIIADKQSGKKRG
ParentalFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGG
F.FV.F..HD..DK..V.K.H.I.GH..EVKKA..K....S.G...G.GG......GRGG...GGG
RetrocopyFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSGG---GGGGSRSSRGGRGGRGRGGG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide