RetrogeneDB ID: | retro_ptro_2504 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
| Coordinates: | 7:1533131..1533530(+) | ||
| Located in intron of: | ENSPTRG00000018870 | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | PFDN4 | ||
| Ensembl ID: | ENSPTRG00000013641 | ||
| Aliases: | None | ||
| Description: | prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868] |
| Percent Identity: | 84.21 % |
| Parental protein coverage: | 97.79 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 0 |
| Parental | MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQ |
| M.ATMKK.AAEDVNVTFE.QQKINK.A.NTSRITELKEEIEVK.KQLQN.EDA.D..MLAD.DCLM.PYQ | |
| Retrocopy | MVATMKKTAAEDVNVTFEEQQKINKSAWNTSRITELKEEIEVKQKQLQNVEDARDGTMLADADCLMMPYQ |
| Parental | IGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEADE |
| IGDVFISHSQEETQEMLE.A.KNLQE..DALES.VE.IQ.V.ADLKVQLYAKFGS.INLEADE | |
| Retrocopy | IGDVFISHSQEETQEMLEAANKNLQEATDALESKVEAIQWV*ADLKVQLYAKFGSSINLEADE |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .02 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 3 .19 RPM |
| SRP007412_heart | 0 .03 RPM | 4 .52 RPM |
| SRP007412_kidney | 0 .00 RPM | 3 .48 RPM |
| SRP007412_liver | 0 .00 RPM | 2 .13 RPM |
| SRP007412_testis | 0 .00 RPM | 14 .65 RPM |
| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_3693 |