RetrogeneDB ID: retro_pper_49

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_2:25530612..25531761(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa007095mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa005292mg
• Aliases: None
• Description: None

Sequence

>retro_pper_49
ATGTCAGTCTTCGACTGGGCTTCTAGAAATCTTAAGCCGACTCAATTGCCAGACGTATTTCCTGTTGAGGTTTTTGATAG
TTTGGTCATTTGTGCCTCCCAGATCCTCCAAAAAGAGGCCAATTGCGTCACCATTGACAACTTAGCCTCAGAATCCACAG
TCGTCGTCGTCGGAGACCTTCACGGGCAGTTGCACGACCTTCTTTTCCTTCTCCGTGATGCTGGCCTTCCCTCAGAAAAT
CGATTCTTCGTCTTCAATGGAAATTATGTTGACAGAGGTGCTTGGGGTTTCGAAACTTTCCTAATTGTGTTAGCTTGGAA
AGTGTTCATGCCAAAAAGGGTGTATCCTTTGCGTGGAAATCATGAATCAAAGTATTGCACTTCTATTTATGGTTTTGAGA
AGGAAGTGTTGACAAAATATAGTGATAGAGGCAAGCATATGTATCGTAGATGTCTTGGGTGCTTTAAAAGTCTTCCTTTG
GCTTCCCTCATTGGTAAACATGTGTACACTGCACATGGAGGTGTATTTCGCCACATCCCTGTGATCCCCAGGAAATCAAA
GGGAATGAAGAGTCGTAGGATGGCTTTCAATCCTGAATCCAATTCATTATCTTTGGGATCTTTTGAAGAACTAAATAAGG
CGAGAAGATCAGTTCTTGATCCTTCATGGGAGGGTTCCAACTTGATTCCCGGCGACGTGATGTGGTCAGATCCTTCAAGG
ACTCCGGGTCTTTCTTTTAATATCGAGAGAGGAATTGGTTTGACATGGGGTCCTGATTGCACTGATAATTTTCTCAAGAA
ATTTCAACTAAAGTTGATTATCAGATCGCATGAAGGCCCTGATGCACGAAAAAAGAGACCAAGTCTTGGTGGAATGGATG
AAGGGTACACCGTCGATCACATTGTGGAGTCAGGAAAGCTGATCACTTTGTTTAGTGCTCCAGACTACCCACAATTTCAG
GGGACAGAGGAGAGGTACAAAAATAAAGGGGCTTACATTATCTTGGAACCCCCTAATTTTGATGATCCTGTATTTCGTAG
TTTCGAAGCAATTACTCCAAGACCAAAGGCAGATCCCTTTTACAATTTTGAAGATGTGACTGATGCTGATGAAGAGCTGG
GCTTGGCATCAATGGTGACCAGTTCGTGA

Alignment

ORF - retro_pper_49 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.51 %
• Parental protein coverage: 81.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSVFDWASRNIEPTQLPDVFPVEVFDSLVLCASKILHKEPNCVAIDNLGSESTVVVVGDLHGQLHDLVFL
          MSVFDWASRN..PTQLPDVFPVEVFDSLV.CAS.IL.KE.NCV.IDNL.SESTVVVVGDLHGQLHDL.FL
Retrocopy MSVFDWASRNLKPTQLPDVFPVEVFDSLVICASQILQKEANCVTIDNLASESTVVVVGDLHGQLHDLLFL

Parental  LHDAGFPSENRFFVFNGDYVDRGAWGLESFLILLAWKVFFPRNVYLLRGNHESKYCTSVYGFEKEVLTKY
          L.DAG.PSENRFFVFNG.YVDRGAWG.E.FLI.LAWKVF.P..VY.LRGNHESKYCTS.YGFEKEVLTKY
Retrocopy LRDAGLPSENRFFVFNGNYVDRGAWGFETFLIVLAWKVFMPKRVYPLRGNHESKYCTSIYGFEKEVLTKY

Parental  SDRGKHVYRKCLGCFEGLPLASIVGKHVYTAHGGIFRHIPATPKRSKGKKNRKIAFSPEPSSLSIGSFEE
          SDRGKH.YR.CLGCF..LPLAS..GKHVYTAHGG.FRHIP..P..SKG.K.R..AF.PE..SLS.GSFEE
Retrocopy SDRGKHMYRRCLGCFKSLPLASLIGKHVYTAHGGVFRHIPVIPRKSKGMKSRRMAFNPESNSLSLGSFEE

Parental  LNKARRSVLDPPWEGSNLIPGDVLWSDPSMTPGLSPNKERGIGLLWGPDCTDNFLKKFQLKLIIRSHEGP
          LNKARRSVLDP.WEGSNLIPGDV.WSDPS.TPGLS.N.ERGIGL.WGPDCTDNFLKKFQLKLIIRSHEGP
Retrocopy LNKARRSVLDPSWEGSNLIPGDVMWSDPSRTPGLSFNIERGIGLTWGPDCTDNFLKKFQLKLIIRSHEGP

Parental  DAREKRPGLGGMDEGYTIDHIVESGKLITLFSAPDYPQFQGTEERYRNKGAYIVLGPPNFDNPVFHSFEA
          DAR.KRP.LGGMDEGYT.DHIVESGKLITLFSAPDYPQFQGTEERY.NKGAYI.L.PPNFD.PVF.SFEA
Retrocopy DARKKRPSLGGMDEGYTVDHIVESGKLITLFSAPDYPQFQGTEERYKNKGAYIILEPPNFDDPVFRSFEA

Parental  ITPRPKANAFYNFEEVIDSDEELDLASMVTS
          ITPRPKA..FYNFE.V.D.DEEL.LASMVTS
Retrocopy ITPRPKADPFYNFEDVTDADEELGLASMVTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_49 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Prunus persica	PRUPE_ppa005292mg	1 retrocopy	retro_pper_49 ,