RetrogeneDB ID: retro_pper_35

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_1:36231382..36232438(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa007933mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa017639mg
• Aliases: None
• Description: None

Sequence

>retro_pper_35
ATGAGGAAAGGAGCTAAGAGGAAGGTCAGCCAGAGAGAAGACAACAAGGAAAACTCGACCAAGCCAGACAACCACAAAGA
ACATCCCAGCAAGGCCACCACTCGATCAAAGCGGGTCAAGGCCTCCCACCCCGAATCCGAGCCAGAGTACTTGGAGGAGC
CCCGTAACTTGGAAGATCTCTGGAAGGCTGCTTTTCCTGTTGGGACAGAATGGGATCAATTGGACGCGGTGTACCGGTTC
AAGTGGGATTTCTCAAATCTGGAACAAGCATTTGAAGAGGGGGGCAAGCTGTTTGGGATTGGGAACAACAAAGTCTATCT
CTTTGGTGGTACGGAGCCTCAACAAGTTCCTTTCAAGGGTAAATTGGAAATTGTTTACATACCTATTGTGGTGGCTGTTG
TATCACCTTGCCCACCTTCTGATAAAATTGGGATCAAGTCAGTTCAGAGAGAGACTGAAGAAATAGTTCCAATGAAAGAG
ATGAAGATGGACTGGGTTCCATATATTCCTCTGGACAAGAGAGACCGCCAAGTTGTGGAATATGGGCGAAAATCTCCTCA
AATATTTGTGTTGGGATGCACTCAGAGAAGGGCTGCTTTGAAGCACATGAAGATAGACCGTCTAAAGAAATTTGATTACT
GCTTGCCATATTTGATGCCAATCAAGGAAGAGGAGCTTGAGCTGAGCACTGAGGTGGACATACTTTTCCCAGCAGAGCCA
AATCCACCGGTTTACTGTGTATTTGATTGGCAGTTTGATGAAGTTGAGGAGTTTGCCGATGATCGGATAAAAGAAGAGGA
ACTATCTGCTGATCAAAAGGATGCCTTCATGGAGTTTGTCAAGGAGAAAGTACGCCAGCAAAAGAGAGAGAATCGAGAGA
AAAAGGAAGCCCGCAGGCAAGCCTTTGAGAAAATGAGTGTGGAAGCTAAAGCAGCATTCGAAAATTTGAAGTATTATAAG
TTCTATCCGGTGCAAACAGCGGATACTCCTGACATATCAGCTGTTAAGGCTTCATACATTAATAGGTACTACAACAAGGC
TCATGAGGTTCTCTGA

Alignment

ORF - retro_pper_35 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRRGAKRKASQKEAENHKESSKAANSSKATRTRTT--KRVKASEPQSEPQYLEDPRNLEDLWKAAFPVGT
          MR.GAKRK.SQ.E..N...S.K..N........TT..KRVKAS.P.SEP.YLE.PRNLEDLWKAAFPVGT
Retrocopy MRKGAKRKVSQRE-DNKENSTKPDNHKEHPSKATTRSKRVKASHPESEPEYLEEPRNLEDLWKAAFPVGT

Parental  EWDQLDSVYQFKWDFSNLEQAFEEGGKLYDLGKNKVYLFGCTEPQLVSVNGENKVVCIPVVVAVVSPFPP
          EWDQLD.VY.FKWDFSNLEQAFEEGGKL...G.NKVYLFG.TEPQ.V...G....V.IP.VVAVVSP.PP
Retrocopy EWDQLDAVYRFKWDFSNLEQAFEEGGKLFGIGNNKVYLFGGTEPQQVPFKGKLEIVYIPIVVAVVSPCPP

Parental  SDKIGINSVQREAEEIIPMKQMKMDWIPYIPLENRDSQV---DRLKSQIFILGCTQRRAALKHMKIDRLK
          SDKIGI.SVQRE.EEI.PMK.MKMDW.PYIPL..RD.QV....R...QIF.LGCTQRRAALKHMKIDRLK
Retrocopy SDKIGIKSVQRETEEIVPMKEMKMDWVPYIPLDKRDRQVVEYGRKSPQIFVLGCTQRRAALKHMKIDRLK

Parental  KFEYCLPYFYQPFKEDELEQSTEVPIMFPGEPK-PVYCEFDWELDELEEFTDKLIEEEELSADQKDAFKE
          KF.YCLPY...P.KE.ELE.STEV.I.FP.EP..PVYC.FDW..DE.EEF.D..I.EEELSADQKDAF.E
Retrocopy KFDYCLPYL-MPIKEEELELSTEVDILFPAEPNPPVYCVFDWQFDEVEEFADDRIKEEELSADQKDAFME

Parental  FVKEKVREQKKNNREAREARRKAIEEMSEEAKAAFENMRFYKFYPVQTPDTPDISNVK
          FVKEKVR.QK..NRE..EARR.A.E.MS.EAKAAFEN...YKFYPVQT.DTPDIS.VK
Retrocopy FVKEKVRQQKRENREKKEARRQAFEKMSVEAKAAFENLKYYKFYPVQTADTPDISAVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_35 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Prunus persica	PRUPE_ppa017639mg	1 retrocopy	retro_pper_35 ,