RetrogeneDB ID:

retro_pper_30

Retrocopy
location
Organism:Peach (Prunus persica)
Coordinates:scaffold_6:2491343..2492294(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:PRUPE_ppa021421mg
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PRUPE_ppa007426mg
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pper_30
ATGGCGATGAAGGAGCTGAAGAAATCTTCTGTAATTCGCCTCAATGTGGGAGGAAACAAATTTTGCACAAGTGTTGATAC
TCTAACTCAGCGTGAGCCTAACTCAATGCTTGCTGCAATGTTTAGTGGACGCCATAATATTGCGTGTGAAGAAGACTGTG
AAAAGGGGTGTGTTTTTATTGACAGGGATGGCACACATTTTCGGCACATCCTTAATTGGTTAAGGGATGCTACTGTTCCT
TTGTTAGAAGAGCGTTGTAAATATTCAGAGCTTTTGAGAGAGGCAGAATATTTTCAACTAGTTGGTCTAACAGAGGAAAT
ACATGCTTTTCTAAACAAGGAGGACGACGATCAAATTGCAAAGTTGGATGCAGATTTTACGCGCAGGGATATCATCAACT
TTATACTATCTAATGCTACAATGAAGTTTAGAGGTTTCAATCTCTCTGGCCTTGATCTTTCGAAACTAGACTTGACGAAG
ATAGATTTCAGTTATGCATGCCTGAGAAATGTTTGTTTCTCAGGTTGTGATCTTACACGCGTAAAATTTAATTATGTGGA
TGCCGAGGGTGCCATCTTTAACAATGCTAGTTTGACAAGTACTGAATTTGTAGGAGCAAATCTCCGTGACGCTTCGTTTG
TTGATGCCAAGCTTCGCTTTGCAAAGATAAAAAGTGCATGCTTGGTAAATTGTAGCTTTTTGAGAGCAATCTTGTATAAT
GCACACCTTTATGACGCTGATCTTACAAATGCAAATTTTGAAGCGGCTAGTCTGGAATGTGCAGCCTTGAAAAATCTCAA
GGCCACGAATACTGCAAATTTTAGGGATGCATATCTTATAAGTTCTGGCGTAGAAGATGTGAATTTGCAACATTTGGTGG
GTGCAAAGCTTGGCGTTGTTACAGCCTGCGGTAATGGGTTTATATGTAAGAAACCAGACGAAATTCGTTGA

ORF - retro_pper_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.48 %
Parental protein coverage: 77.17 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSSLIRLNIGGTKFCTTIDTLTQREPDSMLAAMFSGRHTLC--QDPEKGYVFLDRDGKHFRHILNWLRDGV
SS.IRLN.GG.KFCT..DTLTQREP.SMLAAMFSGRH......D.EKG.VF.DRDG.HFRHILNWLRD..
RetrocopySSVIRLNVGGNKFCTSVDTLTQREPNSMLAAMFSGRHNIACEEDCEKGCVFIDRDGTHFRHILNWLRDAT
ParentalVPTLKDS-KYTEVLREAEYYQLLGLIDGIHAILNKKKEDE--ELDTELTRTDIIKCIQSDR-VRFRGVNL
VP.L....KY.E.LREAEY.QL.GL...IHA.LNK...D....LD...TR.DII..I.S.....FRG.NL
RetrocopyVPLLEERCKYSELLREAEYFQLVGLTEEIHAFLNKEDDDQIAKLDADFTRRDIINFILSNATMKFRGFNL
ParentalSGLDLSKLDLSFVDFSYACLRNVFFSRANLHCAKFKDVDAEGANFHNATLRECEFTGANLRGALLAGANL
SGLDLSKLDL...DFSYACLRNV.FS...L...KF..VDAEGA.F.NA.L...EF.GANLR.A....A.L
RetrocopySGLDLSKLDLTKIDFSYACLRNVCFSGCDLTRVKFNYVDAEGAIFNNASLTSTEFVGANLRDASFVDAKL