RetrogeneDB ID:

retro_ppat_15

Retrocopy
location
Organism:Moss (Physcomitrella patens)
Coordinates:DS545102.1:392437..393076(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PP1S213_64V6
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PP1S108_86V6
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ppat_15
ATGACGTTGCTATCGGTTGCGCTAGTTGCATTCCTGGCTATCTTCCATTCTTCCCCCCCGCCTGTCGAGGCCGCCACTGA
GGCCAAGGAGGTGACACATGGAAGTGTGATAAAGCTCATGCACCTACGCACCAAGTACCGGTTGCACTCGCACGACGTCC
CCTATGCTACTGGCAGTGGACAACAATCCGTGACTGCCTTCCCAGGCGTTGAGGACTCTAACAGTTACTGGAGGGTGCAG
ATAGTAGACGAAGATCACGAGCATGAGCAAGGCGATGTTATTTCGAATGGTGCCCTAGTGCGTCTCCAGCATGCGCGGAC
GCGCAAATGGCTCCACAGTCATGAACATCGATCTCCCATTACTGGAAACCTTGAGGTTAGTGCCTTCGGAGGAGATGAGC
AATCTGACTCTGGTGACTATTGGAAACTGGAAATCGAGGGTAAGGGGAGCGTCTGGACACTAGGTCAGCAAGTTAGGTTT
CTGCACGTTGCTACCAATGGCTACCTTCACAGCCATAACAAGAAGTTCAGCCAATTAGATCAACAAGAGGTGTGCGGAGT
GACAAGGAAGAATTCGGATAATCTCTGGACAGCTGCGGAAGGAATTTATTTTCTTACGAAAGGTGGTAGTATAGAATGA

ORF - retro_ppat_15 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.84 %
Parental protein coverage: 68.25 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALISLALVVLLALLHPSFSPSVEGASNGKEVTYGSMIKLQHDRTKFRLHSHEVPYGSGSGQQSVTAFPG
M.L.S.ALV..LA..H.S..P.VE.A...KEVT.GS.IKL.H.RTK.RLHSH.VPY..GSGQQSVTAFPG
RetrocopyMTLLSVALVAFLAIFHSS-PPPVEAATEAKEVTHGSVIKLMHLRTKYRLHSHDVPYATGSGQQSVTAFPG
ParentalVEDGNSYWAVKPSSDDESIEQGDVIPNGSIVRLQHMRTRKWLHSHLHPSPISGNLEVSAFGGDDQSDTGD
VED.NSYW.V.....D...EQGDVI.NG..VRLQH.RTRKWLHSH.H.SPI.GNLEVSAFGGD.QSD.GD
RetrocopyVEDSNSYWRVQIVDEDHEHEQGDVISNGALVRLQHARTRKWLHSHEHRSPITGNLEVSAFGGDEQSDSGD
ParentalYWRLEIEGKGKVWMQDQKVRLRHVDTNGYLHSHDKKYSRIVSGQQEVCGMGKKNADNLWTAAEGIYFLTR
YW.LEIEGKG.VW...Q.VR..HV.TNGYLHSH.KK.S.....QQEVCG...KN.DNLWTAAEGIYFLT.
RetrocopyYWKLEIEGKGSVWTLGQQVRFLHVATNGYLHSHNKKFSQL--DQQEVCGVTRKNSDNLWTAAEGIYFLTK
ParentalATTVE
....E
RetrocopyGGSIE