RetrogeneDB ID:

retro_pcap_56

Retrocopy
location
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_3100:65087..65294(-)
Located in intron of:ENSPCAG00000016216
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NUTF2
Ensembl ID:ENSPCAG00000015344
Aliases:None
Description:nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722]


Retrocopy-Parental alignment summary:






>retro_pcap_56
ATGGGAGACAAGCCAATTTAGGAACAGACTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAACGACAGAAC
CCAACTAGGCGCAATTTACATTGACGCGTCATGCCTTCTGTGGGAAGGACAGCAGTTCCAGGGAAAAGCTGCTATAGTGG
AGAAGTTGTCTAGCCTTCCATTCCAGAAAATGCAGCACAGCATCACG

ORF - retro_pcap_56 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.2 %
Parental protein coverage: 98.57 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIT
MGDKPI.EQ.GSSFIQHYYQLFDNDRTQLGAIYIDASCL.WEGQQFQGKAAIVEKLSSLPFQK.QHSIT
RetrocopyMGDKPI*EQTGSSFIQHYYQLFDNDRTQLGAIYIDASCLLWEGQQFQGKAAIVEKLSSLPFQKMQHSIT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Procavia capensis was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Procavia capensis was not studied using ChIP-Seq data.