RetrogeneDB ID:

retro_pcap_5

Retrocopy
location
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_6500:75387..76113(+)
Located in intron of:ENSPCAG00000014731
Retrocopy
information
Ensembl ID:ENSPCAG00000014761
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:FTH1
Ensembl ID:ENSPCAG00000010377
Aliases:None
Description:ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976]


Retrocopy-Parental alignment summary:






>retro_pcap_5
ATGTTGTCCTGTTTCCTGTTCCTTTCCAAGAACATCAACGCCTCGCTGGCGTCCCTGTATCTAACGCGTTGCAGATTCCG
GTTCCTGCCACGCTTGTTCCCTGGGTGCTTCTCGCGTCCCTGGCCAGCTAGCCCCTGCCGCCTGCTAGCTGCCTCCTCCT
TTTCCTGGGATCCCCCGGGGCTCACCAACCCCTCTCGGGTCCGCCAGAACTACCACCCCGAATCGGAGGCTGCTATCAAC
CGCCAAATCAATCTCGAGCTCTATGCATCTTACGTGTACTTGTCTATGGCATATTACTTCTCTCGGGATGATGTCGCCTT
GAACAACTTCGCCCGGTATTTCCTTCGCCTGTCCCGGGAGGAAACAGAACATGCTGAGAAACTGATGCGGCTGCAGAATC
AGCGGGGAGGCCGGATCTGCCTGATGGACATCAAGAAACCCGACCTGGACGACTGGGAAAACGGACTGAAAGCCATGGAA
TGTGCTCTGCTCCTGGAAAAAAATGTGAACCAGTCGTTGTTGGAAGTGCATGCTCTGGCCTCTGACAAAGGTGACCCTCA
CTTGTGTGACTTTCTGGAAACCAATTATCTGAATGAGCAAGTCAAGTCAATCAAAGAACTAGGTGACCATGTACACAACT
TGATTAAGATGGGAGCCCCAGATTCTGGCCTGGCAGAATACCTTTTTGACAAACACACTCTTGGAAATGAAAACAAGCCT
AACTAA

ORF - retro_pcap_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.65 %
Parental protein coverage: 97.8 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTFPSQVRQNYSQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKL
T.PS.VRQNY...SEAAINRQINLELYASYVYLSM.YYF.RDDVAL.NFA.YFL..S.EE.EHAEKLM.L
RetrocopyTNPSRVRQNYHPESEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFARYFLRLSREETEHAEKLMRL
ParentalQNQRGGRIFLNDIKKPDRDDWESGLNAMECALFLEKNVNQSLLDLHKLATEKNDPHLCDFIETHYLDEQV
QNQRGGRI.L.DIKKPD.DDWE.GL.AMECAL.LEKNVNQSLL..H.LA..K.DPHLCDF.ET.YL.EQV
RetrocopyQNQRGGRICLMDIKKPDLDDWENGLKAMECALLLEKNVNQSLLEVHALASDKGDPHLCDFLETNYLNEQV
ParentalKSIKQLGDYVTNLRKMGAPESGLAEYLFDKHTMGDSNE
KSIK.LGD.V.NL.KMGAP.SGLAEYLFDKHT.G..N.
RetrocopyKSIKELGDHVHNLIKMGAPDSGLAEYLFDKHTLGNENK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide