RetrogeneDB ID:

retro_pcap_109

Retrocopy
location
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_6671:58769..59158(+)
Located in intron of:ENSPCAG00000015236
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFV2
Ensembl ID:ENSPCAG00000006284
Aliases:None
Description:NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717]


Retrocopy-Parental alignment summary:






>retro_pcap_109
TACCAGGAAGGGCATAAAGCAGCAGTTGGGTTTCCAGTGCTGGATTTAACGTGGAGACAGAATGGATGGTTGCCCATCTC
TGCCATTAACAAAGTTACAGAAGTTTTACTAGTACCCCCAACGACAGCATAAGAAATAACAACTTTTTATACAGTGTATA
ATGGAAAGCCAGTTGGAAAGAATCACCTTCAGGTCTGCACTACCACACCTGTGTGCTTTAAGATTCTGACAGCATCCTGG
AGGCCATACAGAGGAAGCTTGGAATAAAGGTTGACGAGACTATACCTGACACACTTTTCCGTATAGAGATGACATGTTTA
AGTCCCTGTGTGGACGTACCAGTGGTGCACATAAATGACAGCTTCTAAGAAGATGTGACAGCTAAGGAT

ORF - retro_pcap_109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.94 %
Parental protein coverage: 56.71 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTP
Y.EGHKAA...PVLDL..RQNGWLPISA.NKV.EVL.VPP....E..TFYT.YN.KPVGK.H.QVCTTTP
RetrocopyYQEGHKAAVGFPVLDLTWRQNGWLPISAINKVTEVLLVPPTTA*EITTFYTVYNGKPVGKNHLQVCTTTP
Parental-CMLRNSDSILEAIQRKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTTKD
.C.L..SDSILEAIQRKLGIKV.ET.PD.LF..IE..CL..CV..P.V.IND...ED.T.KD
Retrocopy<CVL*DSDSILEAIQRKLGIKVDETIPDTLFR-IEMTCLSPCVDVPVVHINDSF*EDVTAKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Procavia capensis was not studied using RNA-Seq expression data.