RetrogeneDB ID:

retro_oruf_31

Retrocopy
location
Organism:Brownbeard rice (Oryza rufipogon)
Coordinates:4:25231077..25233024(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ORUFI04G25010
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ORUFI02G09480
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_oruf_31
ATGGCAAAATATGCGAGCTTTTCGCGTTTCCGTACGAGCTTTTTTTCCATGCGAATCCGACTAGGATTCGACCTGTCATT
TTCCGCTGTTGACTCCCCGAATCCGACTAGGATTCGAGCTATTGCCTTCCGCTTAGTATATAGGGAGGCAGGCTTCAAGT
CAAGCTCCCATTTGGTCCATTTCTCGCATCCCTCTCCTGAACTTTTCCCTCGCTTTTTGCACCACGCCACCCGATTCGCC
ACCGTGCCGGCGCGCCGCCGATCTGAGCACGAGAGAATGGCTTCCCAGTCGCCACAGTCGCGGGGCGTCGCGGAGCCCAT
CTCGCTCGTCGGCCCGACGCCGGCCGACCTGGAGAGCACGGCGCGGCTGGAGAGGCTCCTCCGCGAGGAGGGCCTGTACG
AGAGCGCCGAGGAGACGGCGGCCCGGGAGGAGGTGCTCCGCGGCCTCCGCGGCGTCGTCGACCGCTGGGTGAAGCGCCTC
ACGCGGCAGCGCGGGTACCCCGACGGCATGGCCGACCGGGCCACCGCCCTGGTGCTCCCCTTCGGCTCCTACCGCCTCGG
CGTCCACGGCCGCGGCTCCGACATCGACGCGCTCGTCGTCGGCCCGTCCTACGTCGACCGCGACCGCGACTTCTTCGGCG
CGCTCGCCGCCGCGCTGGCGGAGACGGCGGCCGTCGCCGAGCTCCAGCCCGTGCCCGGCGCGCACGTTCCCGTGATCAAG
ATGAGGTTCCACGGCGTGCAGGTGGACCTCGTGTACGCCGGCGTGTGCCTCCCCGTGGTGCCCGGCGACCTGGACCTCAG
CGGCCGGTCGGTGCTCCGCGGCCTCGACCTCGCCACCGCGCGCAGCCTCAACGGCGTCCGCGTGGCCGACGAGATCCTGC
GGCTGGTCCCGGACGCCGCCGCGTTCCGCACCACGCTGCGGTGCGTGAAGCACTGGGCCAAGGCGCGGGGCGTCTACTCC
AACGTCGCGGGCTTCCTCGGCGGCGTCGGCTGGGCCATCCTCGTGGCGCGCGTGTGCCTGCTCTACCCCAACGCCTCCCC
CAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTCGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGC
ACAACGACGGCGAGCTCGGCCTCAGCCTCCCGGTCTGGGACCCCCGCCGGAATCCGCGGGACAAGATACACCTCATGCCC
ATCGTGACGCCGGCGTACCCGTGCATGAACTCCGGCTACAACGTCTCGCACGCCACCCTGCGCGTCATCACCGAGCAGCT
CGCCGTCGGCGACGCCGTCTGCCAGGAGATCGTCAAGGCCGGCAGCGGCGGCGGCGGGTGGGACAAGCTGTTCCAGCCGT
TCAACTTCTTCGGCGCGTACAAGAGCTACCTCCAGGTGGACGTGACGGTGACCGGCGGGGAGGAGGACGACCTCCGCGAG
TGGAAGGGCTGGGTGGAGTCGCGGCTGAGGCTGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCA
CCTGCACCCGCAGCCGTACGCCGCCGAGCCCCACAACGAGCCGCGGCGGCGGCGGCGCACGTCGTCCTTCTTCGTGGGCT
TGTCCAAGCCACCGGCGCAGCCGCAGCAGCAGCAGCATCAGCTGTTCGACCTCCGCGCGACGACAGAGGGGTTCAAGGAG
GAGGTGTACATGTACGACTACTGGAGGCCCGGCATGGAGGTCGCGGTGGCGCACGTCCGCCGGAAGGACCTGCCGTCCTA
CGTGCTGCGGCAGCTGCTTCGCTCGCCTGGCCGCCATGATCAGCTCAAGAGGAAGCGCGCCGACGATGATCCGTCTTCTT
CCCCTGCTGCTTCCGATCACTCCGCTTCGAGCTCGAGCAGCAGGGACGCCAAGAGGCCGGCGGCTGCGCCGGGCAGGATC
GGATCGTCGTTTGAGAAGAAGACGTAG

ORF - retro_oruf_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.08 %
Parental protein coverage: 66.39 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGADPPLSLAMPTVADLHKTAELEKFLVEAGLYEGEEESAKREEVLREIDQIVKEWVKKVTIQKGYSEQMV
G...P.SL..PT.ADL..TA.LE..L.E.GLYE..EE.A.REEVLR.....V..WVK..T.Q.GY...M.
RetrocopyGVAEPISLVGPTPADLESTARLERLLREEGLYESAEETAAREEVLRGLRGVVDRWVKRLTRQRGYPDGMA