RetrogeneDB ID:

retro_opri_943

Retrocopy
location
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_4822:30782..32025(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PNPLA8
Ensembl ID:ENSOPRG00000006448
Aliases:None
Description:patatin-like phospholipase domain containing 8 [Source:HGNC Symbol;Acc:28900]


Retrocopy-Parental alignment summary:






>retro_opri_943
CAGGCGCTGAGAAGAACATCTGACCCAAAGCTCTGCATCACAAGGGTAGAAGAGCTGACTTTCCATCTTCTCGAATTTCC
TGAAGGAAAAGGAGTGGCTGCGAAGGAAAGAATTATTCCTTATTTATTGTGACTGAGGCAAATGAAGGATGAAACTCTTC
AGGCTGCAGTTAGAGAAATTTTGGCCTTGATTGGTTATGTGGATCCAGTGAAAGGCAGAGGGATTCGAATTCTTACAATT
GATGGTGGAGGAACAAGGGGTGTGGTTGCTCTTCAGACGCTCAGAAAATTAGTTGAACTTACTCAGAAGCCAGTTCATCA
GCTCTTTGATTACATCTGTGGTGTAAGCATAGGTGACATATTAGCTTTCATGTTAGGACTGTTCCACATGCCACTGGACG
AATGTGAGGAACTTTATCGGAAACTAGGATCAGATGTATTTTCACAAATGTCATCGTTGGAACAGTCAAAATGAGCTGGA
GCCATGCATTTTATGACAGTCAGACATGGGAAAAGATTCTTAAGGAGAGAATGGGATCTGCACTAATGATTGAAACAGCA
AGAAACCCCACGTGTCCTAAGGTAGCTGCTGTGAGTACTATCGTAAACAGAGGGATAACGCCAAAAGATTTTGTGTTCAG
AAACTATGGTCATTTTCCTGGAATCAAGTCTCATTACTTGGGAGGCTGTCAGTACAAGATGTGGCAGGCCATCAGAGCCT
CCTCTGCTGCCCCGGGCTACTTTGCAGAATACACCCTGGGAAACGATCTGCATCAGGATGGAGGTTTGCTTCTGAATAAC
CCTTTGGCATTGGCAATGCATGAGTGTAAGTGCCTTTGGCCAGACGTCCCGCTGGAGTGCATTGTTTCCCGGGCACTGGC
TGCTATGACAGCGATGTGAGGAACACTGCAACATACACAAGCCTGAAAACCAAACTTTCTAATGTCATCAACAGTGCTAC
CGACACAGAAGAGGTCCATATTATGCTGGATGGTCTGTTACCTCCTGACACCTACTTCAGATTCAATCCTGTCATGTGTG
AGAACATACCTCTGGATGAAAGTCGAAATGAAAAACTGGATCAGCTGCAGCTGGAGGGCTCCAAGTACATAGAAAGAAAT
GAGCAAAAAATGAAAAAAGTTGCAAAAATCCTGAGTCAAGAAAAAACAACCCTGCAGAAAATCAACGATTGGATCAAATT
AAAAACTGACATGTATGAAGGCCTTCCGTTCTTTTCAAAATTA

ORF - retro_opri_943 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.61 %
Parental protein coverage: 53.99 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQAFTRTT--KLCFTRVEELTFHLFEFHEGKGAAAKERIIPYLLRLRQMKDETLQAAVREILALIGYVDPV
QA..RT...KLC.TRVEELTFHL.EF.EGKG.AAKERIIPYLL.LRQMKDETLQAAVREILALIGYVDPV
RetrocopyQALRRTSDPKLCITRVEELTFHLLEFPEGKGVAAKERIIPYLL*LRQMKDETLQAAVREILALIGYVDPV
ParentalKGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYR
KGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPVHQLFDYICGVS.G.ILAFMLGLFHMPLDECEELYR
RetrocopyKGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPVHQLFDYICGVSIGDILAFMLGLFHMPLDECEELYR
ParentalKLGSDVFSQ-NVIVGTVKMSWSHAFYDSQTWEKILKERMGSALMIETARNPTCPKVAAVSTIVNRGITPK
KLGSDVFSQ.NVIVGTVKMSWSHAFYDSQTWEKILKERMGSALMIETARNPTCPKVAAVSTIVNRGITPK
RetrocopyKLGSDVFSQ<NVIVGTVKMSWSHAFYDSQTWEKILKERMGSALMIETARNPTCPKVAAVSTIVNRGITPK