RetrogeneDB ID:

retro_opri_1060

Retrocopy
location
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_64099:2490..2681(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOPRG00000015425
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37A
Ensembl ID:ENSOPRG00000004436
Aliases:None
Description:ribosomal protein L37a [Source:HGNC Symbol;Acc:10348]


Retrocopy-Parental alignment summary:






>retro_opri_1060
ATTGAAATCAGCGAGCACACCAAGTACACCTGCTCCTTCGGTGGCAAAACAAGATGAAGAGGCGCGCCGTGGGCATCTGG
TACTGTGGCTCCTGCATGAAGACGGTGGCCGGGGGCGCCTGGACCTACAACACCACTTCCGCCATCACAGTCAAGTCTGC
GATCAGAAGACTGAAGGAGTTGAAAGACCAG

ORF - retro_opri_1060 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.77 %
Parental protein coverage: 69.57 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIEISQHAKYTCSFCGKT-KMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
IEIS.H.KYTCSF.GKT.KMKRRAVGIW.CGSCMKTVAGGAWTYNTTSA.TVKSAIRRLKELKDQ
RetrocopyIEISEHTKYTCSFGGKT<KMKRRAVGIWYCGSCMKTVAGGAWTYNTTSAITVKSAIRRLKELKDQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ochotona princeps was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ochotona princeps was not studied using ChIP-Seq data.