RetrogeneDB ID: retro_ogar_965

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873532.1:756005..756786(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010221
• Aliases: None
• Description: None

Sequence

>retro_ogar_965
GCCCACACTTTCGGACCTGGATCTGGTATTGGAGACGCACATTGTGACAAGGCCGAGATCTGAACTAAAAACTCCAGGGG
AACAGACTTGTTCTTGCCTGCTGTTCATGAGCTTGGCCATTCCTTGGGTCTCAGCCATTCCAATGAATGAAAGACCTAAT
GTTCCCCACCTGTGATTATAGTGACCTCAATGCATTTCACCTCTCTGCTGATGACATACATGTCTTTCAGTCCCTATAGG
AAGGCCTGAAGACCACCAACCCACACCAGATCCTGACAGTCCAAAACCAGTTATCTGTGACCCCAATTTGAGTTTTGATG
CTGTCACTATAGTGAGAGATAAAGCCATTTTCTTTAAAGACAGATTCTTCAGGTAGGAGGCTCCTAAGAGACCAGAGACA
GGTGATAGCTTGATTTCTCCCGCATGGCCAACCTGCCCATCTGGCATTCAAGCCGCTCATGAAATTGAAGCCAGAAATCA
AGTTGTTTATTTTTTAAAAATGACAAGTACTGGCTAATTAGCAATTTAAGATCACAGCCGAATTATCCCAAGAGCATCCG
TTCTCTGGGTTTCCCTGACTCTGAAAAACACTGACACAGTTGTTTTTAACCCACTTTTTCATACGACCTACTTCTTTGCA
GACGACTGATATTAGAGGTCTGATGAGAGGAGACAGTGCATGGAGTCTGGTTATCCCAAACCGATTACCAAGCACTTCCC
AGGAACAAGGCCTAAAAACAGATGTGACTGTTTCTTCCAAGGATCTAACCAATTTGAATAT

Alignment

ORF - retro_ogar_965 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.19 %
• Parental protein coverage: 55.34 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  AHAFGPAPGLGGDAHFDEDEFWTKNYRGTNLFLVAVHEFGHSLGLGHSND-KNAIMFPTYSYVDPNRFRL
          AH.FGP..G.G.DAH.D..E..TKN.RGT.LFL.AVHE.GHSLGL.HSN......MFPT..Y.D.N.F.L
Retrocopy AHTFGPGSGIG-DAHCDKAEI*TKNSRGTDLFLPAVHELGHSLGLSHSNE<MKDLMFPTCDYSDLNAFHL

Parental  SDDDIRGIQSL-YGGPE-RQPMPNPDRPKSDMCDPDLSFDAVTTVGDKIFFFKDKFFWWKVPERPETSTS
          S.DDI...QSL..G.PE..QP.P.PD.PK...CDP.LSFDAVT.V.DK..FFKD.FF....P.RPET..S
Retrocopy SADDIHVFQSL<IGRPEDHQPTPDPDSPKPVICDPNLSFDAVTIVRDKAIFFKDRFFR*EAPKRPETGDS

Parental  LLSSLWPTLPSGIQAAYEIAARN-QVFLF-KDDKYWLISYLRPQPNYPKSIHSL-GFPD-SVKKIDAAVF
          L.S..WPT.PSGIQAA.EI.ARN...F.F.K.DKYWLIS.LR.QPNYPKSI.SL.GFP....K..D..VF
Retrocopy LISPAWPTCPSGIQAAHEIEARN>KLFIF>KNDKYWLISNLRSQPNYPKSIRSL<GFP*<TLKNTDTVVF

Parental  NPLHHKTYFFVDDQYWRYDERRQFMDPGYPRLITKYFPGIGPK--VDAVFYSENRYYY
          NPL.H.TYFF.DD.Y.R.DERRQ.M..GYP..ITK.FPG..PK...D..F...N...Y
Retrocopy NPLFHTTYFFADD*Y*RSDERRQCMESGYPKPITKHFPGTRPKNRCDCFFQGSNQFEY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_965 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008413	6 retrocopies	retro_chof_1424, retro_chof_1611, retro_chof_2207, retro_chof_325, retro_chof_595, retro_chof_645,
Equus caballus	ENSECAG00000019445	1 retrocopy	retro_ecab_153,
Loxodonta africana	ENSLAFG00000010062	1 retrocopy	retro_lafr_147,
Macaca mulatta	ENSMMUG00000004250	1 retrocopy	retro_mmul_2325,
Otolemur garnettii	ENSOGAG00000010221	1 retrocopy	retro_ogar_965 ,