RetrogeneDB ID: retro_ogar_954

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873531.1:77765..79028(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032449
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ACOT9
• Ensembl ID: ENSOGAG00000002305
• Aliases: None
• Description: acyl-CoA thioesterase 9 [Source:HGNC Symbol;Acc:17152]

Sequence

>retro_ogar_954
CGGGTTTGTGCCTTGAGCAAGGGGCTACTTGCTCCTGGCAGAGGATTGACTCAAGAATCCCAGGACTCCAGAAAAAAAGG
AACCTTCCATATTCTTGAAGTTCAGGATAAACTGCGGAAGATAGTAGGAGCATCTACAAACTGGAGTGACAATGTGAAAG
TAATGGAGGAAAGGAAATTGCTAAAGGGTGTTTTGGCTGAGTCACAGGAAGGACTGTCACCCAGGATAATGAAGGACAGT
TACATTGAAGTTTTCTTGCCTTTGGGCAGTGAGCCGGAATTACGAGAGAAGTATTTGACTTCCCTAAACACCGTCAGGTT
CGGCAGGATTCTTGAGGATCTTGACAGCTTGGGAGTTCTTATCTGTTACATGCACAACAACATTGATTCAGTTGAGATGT
CTCCTTTATCAATAGCTACAGCCCTTGTGGACAATATCGACATGTGTAAGCAGCACTTAAGCCCAGAACAGGACATTAAG
TTCACTGGCCACGTTAGCTGGGTTGGGAAGACGTCCATGGAGGTGAGGATGCGAATGTTCCAGTCACAGGGTGATGAGTT
TCATCCTGTTTTGGACGCCACATTTGTAATGGTGGCCCGTGATTCTGAAAATAAAAGGTCGGCATTTGTACATCCACTCA
TCCTTGAAAGCCCAGAGGAAGAAGAGCTCTTTAGACAAGGAGAATTGAACAAGGGGAGAAGAAAGGCCTTCCTTTCCAGG
TCCTTACTGAAAACGGCCCCCAACGCTGAGGAGAGGACCACTATACATAAGCTGTTTCTTAACACGTTGAGTCCAAAGAC
TGTAAATTTTCAGAGTCGAATTTTGCCCCCTAATGCAGAATGGATGGAGAATTCAGAACTGAAGAGCCTGGAAATTTGCC
ACCCTCAGGAGAGGAACGTTTTCAATCGGATCTTTGGTGGTTTCCTGATGAGGAAAGCCTATGAACTTGCTTGGGCTACT
GCGTGTAGCTTCGGCGGTGGCACCCGACCATTTGTGGTGGCAGTGGGTGACATCATGTTTCAGAAACCTGTTGAAATTGG
CTCCTTGCTCTTTCTTGCTGCGCAGGTTTGCTTTACTCAGGCCAATTACACTCAAGTCAGAGTACACAGTGAGGTGGCCT
CCCTTCAGAGTAAAGAGCATACAACCACCAACATCTTTCATTTCACGTTCATGTCGGAAAAGGAAGTGCCCTTGATTTTC
CCCCGAACATACGGAGAGTCCATGTTGTACTTGGATGGGCAACGGCATTTCAACTCGAGGTCC

Alignment

ORF - retro_ogar_954 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.04 %
• Parental protein coverage: 96.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RVCALSKGLLSPGRGLNQGFQDSRKQGTFHIHEVRDKLREIVGASTNWRDHVKAMEERKLLHGFLAESQK
          RVCALSKGLL.PGRGL.Q..QDSRK.GTFHI.EV.DKLR.IVGASTNW.D.VK.MEERKLL.G.LAESQ.
Retrocopy RVCALSKGLLAPGRGLTQESQDSRKKGTFHILEVQDKLRKIVGASTNWSDNVKVMEERKLLKGVLAESQE

Parental  GMPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHTKIHSVEMSPLSIVT
          G..PR.MKDSYIEV.LPLGSEPELREKYLT..NTVRFGRILEDLDSLGVLICYMH..I.SVEMSPLSI.T
Retrocopy GLSPRIMKDSYIEVFLPLGSEPELREKYLTSLNTVRFGRILEDLDSLGVLICYMHNNIDSVEMSPLSIAT

Parental  ALVDKIDLCKKSLSPEQDIKFSGHVSWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFV
          ALVD.ID.CK..LSPEQDIKF.GHVSWVGKTSMEV.M.MFQ..GDEF.PVLDATFVMVARDSENK..AFV
Retrocopy ALVDNIDMCKQHLSPEQDIKFTGHVSWVGKTSMEVRMRMFQSQGDEFHPVLDATFVMVARDSENKRSAFV

Parental  NPLILESPEEEELFRQGELNKGRRIALSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFQSRILPPNAV
          .PLILESPEEEELFRQGELNKGRR.A..S.SLLK.AP.AEERTTIH..FL.TL.PKT..FQSRILPPNA.
Retrocopy HPLILESPEEEELFRQGELNKGRRKAFLSRSLLKTAPNAEERTTIHKLFLNTLSPKTVNFQSRILPPNAE

Parental  WMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGG-SRPFVVAVDDIMFQKPVEIGSLL
          WMENS.LKSLEICHPQERN.FNRIFGGFLMRKAYELAWATACSFGG..RPFVVAV.DIMFQKPVEIGSLL
Retrocopy WMENSELKSLEICHPQERNVFNRIFGGFLMRKAYELAWATACSFGGGTRPFVVAVGDIMFQKPVEIGSLL

Parental  FLSSQVCFTQNNYIQVRVHSEVASLQKKEHTTTNVFHFTFMSEKEVPLVFPRTYGESMLYLDGQRHFNSM
          FL..QVCFTQ.NY.QVRVHSEVASLQ.KEHTTTN.FHFTFMSEKEVPL.FPRTYGESMLYLDGQRHFNS.
Retrocopy FLAAQVCFTQANYTQVRVHSEVASLQSKEHTTTNIFHFTFMSEKEVPLIFPRTYGESMLYLDGQRHFNSR

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_954 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000007768	1 retrocopy	retro_mdom_332,
Mus musculus	ENSMUSG00000025287	1 retrocopy	retro_mmus_76,
Otolemur garnettii	ENSOGAG00000002305	1 retrocopy	retro_ogar_954 ,