RetrogeneDB ID: retro_ogar_858

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873529.1:7274990..7275697(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CA7
• Ensembl ID: ENSOGAG00000014659
• Aliases: None
• Description: carbonic anhydrase VII [Source:HGNC Symbol;Acc:1381]

Sequence

>retro_ogar_858
CACCACAGCTGGGGCTACAGTCCACGTGACCACCCCTCACATTGGCACAGCTGTATCCAATGCCCAGGGAGACCGCCAAT
CGCCTATCGATATCCTATCTAGCCTGGCTTATACTCACCAGGCCTGCCACTCTGGAGCGTTCCTGTGAGGCTTACATGTC
TTTCAGCACAACCAACACTGGCCACTCTGTCCAGGTAGACTTCAGTGACAGCAATGACAAAACCATGATGACTGTGGACC
CCCTGAAAGGGCTTTACCACCTTAAGCAGTTCCACTTCCACTGGGGCAAGGAGCAGGACGATGAGGGGTCAGAGCGCACG
ATGGAAGCAATTCCTCCCCCTGCGAGCTGCACCTGGTTCCCTGGAACAGCCAGAAGCACAGCACCTCTGGGGAGGCGGCC
ACAGCAGAGGTCCTTGGCTGGGGTCCGCATCTTTTTGGAGACTGGGACGAGCACCCAGGCATGAACTGTCTGACAAATGT
CCCCTACATGGTTCAGTTTAGAGGCACCAAGACTCATTTCAGCTGCTTCAGCCTCCAGTGCCTCCTGCCTGCCAGCCGGC
GCTACTGGACCTATCCAGGTTCCCTGATGATTCCCTGCTCAGTAAGTGTATTACCTGGATTGTGCTCTAGAAGCCCATCT
ACATCTTTGAGAAGCAGATGGAGAAGTTAAGAGCCTGCTTTTCACTTTGGAGAATGAAGAGAGGATC

Alignment

ORF - retro_ogar_858 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.54 %
• Parental protein coverage: 90.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  HHGWGYGQDDGPSHWH-KLYPI-AQGDRQSPINIVSSQA-VYSPSL-RPLEISYEACMSLSITNNGHSVQ
          HH.WGY...D.PSHWH..LYP..AQGDRQSPI.I.SS.A..YSP.L...LE.S.EA.MS.S.TN.GHSVQ
Retrocopy HHSWGYSPRDHPSHWH<QLYPM<AQGDRQSPIDILSSLA<LYSPGL<ATLERSCEAYMSFSTTNTGHSVQ

Parental  VDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDT-GSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAS
          VDF.DS.D.T..T..PL.G.Y.LKQFHFHWGK..D..GSE.T......P.........A......G....
Retrocopy VDFSDSNDKTMMTVDPLKGLYHLKQFHFHWGKEQDDEGSERTMEAIPPPASCTWFPGTARSTAPLGRRPQ

Parental  APDGLAVVGIFLETG-DEHPSMNRLTDALYMVRFKGTKAQFSCFDPKCLLPASRHYWTYPGSLTTP-PLS
          ....LA.V.IFLETG.DEHP.MN.LT...YMV.F.GTK..FSCF...CLLPASR.YWTYPGSL..P..LS
Retrocopy QRS-LAGVRIFLETG<DEHPGMNCLTNVPYMVQFRGTKTHFSCFSLQCLLPASRRYWTYPGSLMIP<LLS

Parental  ESVTWIVLREPIRVSERQMEKFR-SLLFTSEDDERI
          ...TWIVL..PI...E.QMEK.R.SLLFT.E..ERI
Retrocopy KCITWIVL*KPIYIFEKQMEKLR<SLLFTLENEERI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_858 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000014659	1 retrocopy	retro_ogar_858 ,