RetrogeneDB ID: retro_ogar_815

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:37732236..37732960(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF44
• Ensembl ID: ENSOGAG00000004804
• Aliases: None
• Description: ring finger protein 44 [Source:HGNC Symbol;Acc:19180]

Sequence

>retro_ogar_815
CCCACTTTCCCCACCCCACAGCCCACCGACATGGCTCCCTTTTGGCAGTCTGTATCACTACAGATCCAGCACCCACATAT
GCCCCTCCAATGGCTGGACAACAATGTGGAGTGGACCTGCAGGTGGATCTGCACACCCTGCGTAATTTTACCTCTTGCAC
CTCTGCCCCAATCCTACCCTGTCCCCATCAGTGGCCCTGCATTACTTACCCCACAATCTGCTGCACCAAGAGCTGTCCTT
TGGTGTGCCATATTCTCCCAGGATGCTGCAAAGACTGAGCACCCAGAGACATGGTCTGCTACCCCCAATGTCCACCCCAC
ACCCACCACCTTATTACCCCAGCTTCCTGCCCTACTTCCTCTCAATGCTGCCAGTGTCACCAACAGTGATGGGGCTCACC
ATCGGCCTGGATCTGGATGTGGATAACATGGACATGGAGAACTATGAAACCCTCCTGATCCTGGCCAAAGGGCTGGGAGA
TGCCAAGCCCTGAGACCACAACAAAGCAGATACAGCAGCTCCCATCTATTGCTTTAACCCAGACATCCATCAGTCAAAAC
AGCCACTGTGTATGGTCTGTGGCAGTGACTTCGAATGTGATAGCTGCTCCAAATCCTTCCTGTAGACATAAGTTCCACAC
CAAGTGTATCCAAGTGGTTGAAGGCTAAGCAGACCTGTACCATTTGCCAGGCCTCATGCCTCCAAGGTGCCCAGAGAGGC
TGAG

Alignment

ORF - retro_ogar_815 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.52 %
• Parental protein coverage: 55.78 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  PPAPPPQPTHMAPLGQFVS--LQTQHPRM-PLQRLDNDVDLRGDQRPLGSFTYSTSAP-GPTLSPSVPLH
          P..P.PQPT.MAP..Q.VS...Q..H....P.......VDL..D...L..FT..TSAP..PTLSPSV.LH
Retrocopy PTFPTPQPTDMAPFWQSVSLQIQHPHMPL<PMAGQQCGVDLQVDLHTLRNFTSCTSAP<NPTLSPSVALH

Parental  YLSHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPTAMGPT
          YL.H..LHQELSFGVPYS..M..RLSTQ.......L.PP...P.PPPYYPSFLPYFLSMLP.SPT.MG.T
Retrocopy YLPHNLLHQELSFGVPYSPRMLQRLSTQ----RHGLLPPMSTPHPPPYYPSFLPYFLSMLPVSPTVMGLT

Parental  ISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQ-
          I.LDLDVD...MENYE.LL.LA..LGDAKP....KAD....P.Y.FNPD.HQS.Q.LC.VC.SDFE....
Retrocopy IGLDLDVDNMDMENYETLLILAKGLGDAKP*DHNKADTAA-PIYCFNPDIHQSKQPLCMVCGSDFECDS<

Parental  LLRVLPCSHEFHTKCVDKWLKANRTCPICRAD-ASEVPREAE
          LL..LP......T..V.KWLKA..TC.IC.A..AS.VPREAE
Retrocopy LLQILPVDIS-STPSVSKWLKAKQTCTICQAS>ASKVPREAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_815 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000004804	1 retrocopy	retro_ogar_815 ,