RetrogeneDB ID: retro_ogar_807

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:15068835..15069869(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C4orf27
• Ensembl ID: ENSOGAG00000008007
• Aliases: None
• Description: chromosome 4 open reading frame 27 [Source:HGNC Symbol;Acc:26051]

Sequence

>retro_ogar_807
ATGGTTGGTGGCGGTGGGAAATGGAGGCCCGGTGGGCAGGGGCAGCAGAGTGAAAAACCAGTTGATATGAAGAAGAGTAA
ATCCTGTGAAGCTGATGTCTCCAGTGACCTTCAGAAAGAAGTAGAAAGTCATTATAAGCTCTCTCTACCTGAAGATTTCT
ATCACTTCTGGAAGTTCTGTGAGGACCTTGATGCTGAAAAGCCAGCTGATTCACTTCTGCAAGCCTTGAACTTCAGTTAG
TGGGTCCTTATGATATCCTTGCTGGAAAACATAAAATGAAAAAATCAACAGGCCTGAATTTTAACCTTCACTGGAGGTTT
TACTATGATCCTCCTGAGTTCCAGACCATTATTATTGGAGATGATAAAACTTAGTACCACGTGGGGTATTTCAGGGATTC
TCCTGATGAACTTCCTGAATATGTTGGTATAAATGAAGCAAAGAAAAATTGTATGATTATTCCTAGTGGAGCTAATGTGT
TTGTGGCAGTCAAATTATTTTTGATGAGAAAACTTAAAGAAGTAACAGATAAAAGGAAAATTAACTTCTTGAAAAACATA
GATGAAAAACTCACAGAAGCAGCCAGAGAACTGGGATACTCACTAGAACAGAAGACCATGAAGATGAAACAGAGAGATAA
AAAAGTTATGACAAAGACCTTTCATGGTGCAGGCTTAGTTGTTCCCGTAGATAAAAATGATGTTGGGTACAGAGAGCTCC
CTGAAACAGATGCTGATCTCAAGAGAATTTGCAAGAAAATAGTTGAGGCTGCCAGTGATGAGGAAAGACTGAAAGCTTTT
GCTCCCACCCAGGAAATGATGACCTTTGTGTAATTTGCGAATGATGAATATGACTATGGCATGGGCCTGGAGCTGGGGAT
GGACCTCTTCTGCTGTGGTTCCCACTATTTTCATAAAGCTGCTGGCCAGCTTTTACCTCTTGCATATAATCTTTTGAAGA
GGAATCTATTTGCAGAAATTATTGAAGATCACCTGGCATACAGAAGTAAAGAGAACATAGACCAGCTTGCAGCA

Alignment

ORF - retro_ogar_807 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.8 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVGGGGKRRPGGQGQQSEKPVDMKKSKSCEADVSSDLRKEVESHYKLSLPEDFYHFWKFCEELDAEKPAD
          MVGGGGK.RPGGQGQQSEKPVDMKKSKSCEADVSSDL.KEVESHYKLSLPEDFYHFWKFCE.LDAEKPAD
Retrocopy MVGGGGKWRPGGQGQQSEKPVDMKKSKSCEADVSSDLQKEVESHYKLSLPEDFYHFWKFCEDLDAEKPAD

Parental  SL-SASLGLQLVGPYDILAGKHKMKKSTGLNFNLHWRFYYDPPEFQTIIIGDDKTQYHMGYFRDSPDELP
          SL.SASL.LQLVGPYDILAGKHKMKKSTGLNFNLHWRFYYDPPEFQTIIIGDDKT.YH.GYFRDSPDELP
Retrocopy SL<SASLELQLVGPYDILAGKHKMKKSTGLNFNLHWRFYYDPPEFQTIIIGDDKT*YHVGYFRDSPDELP

Parental  EYVGINEAKKNCMIVPSGDNVFAAVKLFLMRKLKEVTDKKKINLLKSIDEKLTETARELGYSLEQKTMKM
          EYVGINEAKKNCMI.PSG.NVF.AVKLFLMRKLKEVTDK.KIN.LK.IDEKLTE.ARELGYSLEQKTMKM
Retrocopy EYVGINEAKKNCMIIPSGANVFVAVKLFLMRKLKEVTDKRKINFLKNIDEKLTEAARELGYSLEQKTMKM

Parental  KQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKKIVEAASDEERLKAFAPIQEMMTFVQF
          KQRDKKV.TKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKKIVEAASDEERLKAFAP.QEMMTFV.F
Retrocopy KQRDKKVMTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKKIVEAASDEERLKAFAPTQEMMTFV*F

Parental  ANDECDYGMGLELGMDLFCCGSHYFHKAAGQLLPLAYNLLKRNLFAEIIEDHLAYRSKENIDQLAA
          ANDE.DYGMGLELGMDLFCCGSHYFHKAAGQLLPLAYNLLKRNLFAEIIEDHLAYRSKENIDQLAA
Retrocopy ANDEYDYGMGLELGMDLFCCGSHYFHKAAGQLLPLAYNLLKRNLFAEIIEDHLAYRSKENIDQLAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_807 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000003090	1 retrocopy	retro_ggor_2306,
Myotis lucifugus	ENSMLUG00000017052	1 retrocopy	retro_mluc_395,
Otolemur garnettii	ENSOGAG00000008007	1 retrocopy	retro_ogar_807 ,
Ictidomys tridecemlineatus	ENSSTOG00000001481	1 retrocopy	retro_itri_101,