RetrogeneDB ID:

retro_ogar_778

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873527.1:11008229..11008742(-)
Located in intron of:ENSOGAG00000016708
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:B4USW9_OTOGA
Ensembl ID:ENSOGAG00000003205
Aliases:None
Description:High-mobility group box 1 (Predicted) [Source:UniProtKB/TrEMBL;Acc:B4USW9]


Retrocopy-Parental alignment summary:






>retro_ogar_778
AGAGGCAAAATGTCATCATATACATTCTTTTTTGCAAACTTAGCAGCAGCACAAGAAACACCTAGATGCTTCAGTCAGTT
TCTCTGAATTTTGTAAGAAGTGATCAAAGAGGTGGAAGACCATGTGTGCTAAAGAGAAAGGAAAATTTGAAGACATGGCA
AAGGTGGACAAGGCCTGTTAGGAAAGAGGAAAGAAAACCTATATCCTCCTAAAGGGAAAACAAAGTTCAAGGGTCCCAGT
GCACCCAAGAGGCCTCCTTTGACCTTTTTCTTGTTCTGTTCTGAGTATCGCCCCTAAATGGAAGGAGAACATCCTGGGCT
ATCCTTTGGTGATGTTGCAGAGAAACTGGGAGAGGTGTGGAATAACACTGCTGCAAATGACAAGCAGCCTGATGAAAAGA
AGGCTGCAAAGCTGAGGGGAAAATACGAAAAGGATATTGCTGCATACTGAGCTACAGGAAAGCCTGATGCAGCAGAAAGG
GGAGTTGTCAAGGCTGAAACAAGCAAGAAAAAG

ORF - retro_ogar_778 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.71 %
Parental protein coverage: 83.33 %
Number of stop codons detected: 5
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalRGKMSSYAF-FVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY
RGKMSSY.F.F.QT......KKH.DASV.FSEF.KK.S.RWKTM.AKEKGKFEDMAK.DKA..ER..KTY
RetrocopyRGKMSSYTF>FLQT*QQH--KKHLDASVSFSEFCKK*SKRWKTMCAKEKGKFEDMAKVDKAC*ERGKKTY
ParentalI-PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK
I.PPKG.TK..FK.P.APKRPP..FFLFCSEYRP...GEHPGLS.GDVA.KLGE.WNNTAA.DKQP.EKK
RetrocopyI<PPKGKTK--FKGPSAPKRPPLTFFLFCSEYRP*MEGEHPGLSFGDVAEKLGEVWNNTAANDKQPDEKK
ParentalAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK
AAKL..KYEKDIAAY.A.GKPDAA..GVVKAE.SKKK
RetrocopyAAKLRGKYEKDIAAY*ATGKPDAAERGVVKAETSKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide