RetrogeneDB ID:

retro_ogar_759

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873527.1:12833630..12834396(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TAF8
Ensembl ID:ENSOGAG00000016885
Aliases:None
Description:TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa [Source:HGNC Symbol;Acc:17300]


Retrocopy-Parental alignment summary:






>retro_ogar_759
ATGGCTGATGTGGTGGCCACAACTGGGGTCAGCAGCTCCGGAACAAGATCAGGAAGTAAATAGTTTTCTAACCCTGCTGA
TAACTACCATTTGGCCTGGAGGAGAACCCTACAAGTGGCTGTGAGCTCCTTGCTGACAGAGGCAGGGTTTGAGAGCGCTG
AAAAAGCATCCGTGGAAACACTGACAGAGATCCTGCAGAGCTTCATTTCAGACATTGGGAGGAAGGCCAAGTTTTACCGT
GAGCACACAGCCAGGACTCAGCTCTCACTGTTGGATAAGGTGGTCACACTTGTTGAGATGGGTTTTAATGTGAACACTCT
CTCAACTTATACAAAATGGTCTCAGAGGATGGTCATCACCGCTCCTCCAGTGACCATTCAACCAGTGATTCCCAAGGTCC
TCACTGCAGGGCAGAACCAACCTCATACCACACATCCCCAGCCATTTCCCTAAGTTCCCTGATCCCCACACTTACGTCAA
AACTCCAATGTACTGTGAGCCTATGTTAGACTACCAGGTCCTGGAAGAGAAGGCTGCACTCCAGAGATGCGATGTGGAGC
AGGCACTCACCCGGTTCATGGCCAAGACAGGAGAGGCTGAGAGTTTTTTCAAAGGTGATGTTAGCACATTTCCATTAACT
GCTGCCAGACCATTCACCGTTCCCTCCCTGACAGCTCTTCTTCCATCTGAGCTGGAGATGCAATAAATGGAAGAGATGGA
TTCCTTGGAGCAGGATGAGCAGACAGAGAGAACCTATCTGTTCTTA

ORF - retro_ogar_759 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.65 %
Parental protein coverage: 82.58 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMADAAATTGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYIS
MAD..ATTG...SGTRSGSK...NPADNYHLA.RRTLQV.VSSLLTEAGFESAEKASVETLTE.LQS.IS
RetrocopyMADVVATTGVSSSGTRSGSK*FSNPADNYHLAWRRTLQVAVSSLLTEAGFESAEKASVETLTEILQSFIS
ParentalEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNR
.IGR.AK.Y.EHTARTQ..L.D.VVTLVEMGFNV.TL..Y.K.SQRMVITAPPVT.QPV.PK.LTAGQN.
RetrocopyDIGRKAKFYREHTARTQLSLLDKVVTLVEMGFNVNTLSTYTKWSQRMVITAPPVTIQPVIPKVLTAGQNQ
ParentalPHPPHIPSHF-PEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVS
PH..H.P..F.P.FPDPHTY.KTP.Y.EP..DYQVL.EKAA.QR.DVE.ALTRFMAKTGE..S.FK.DVS
RetrocopyPHTTH-PQPF>PKFPDPHTYVKTPMYCEPMLDYQVLEEKAALQRCDVEQALTRFMAKTGEAESFFKGDVS
ParentalTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLSL
TFPL.AARPFT.P.LTALLPSELEMQ.MEE.DS.EQDEQT....L.L
RetrocopyTFPLTAARPFTVPSLTALLPSELEMQ*MEEMDSLEQDEQTERTYLFL