RetrogeneDB ID:

retro_ogar_711

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873526.1:22521705..22521906(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPS36
Ensembl ID:ENSOGAG00000024260
Aliases:None
Description:mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:16631]


Retrocopy-Parental alignment summary:






>retro_ogar_711
ATGATGGGCAGCAAGGCGGTGTCTGACAGCAGGGCCATCCAGGCAGACCAGCCATGCACACCATTAATGAGTTTCTCCGG
CAGAGGAGACAGTCTTAAACCCAATGTGTCAGAAACTTGAAGATCAGCAATGCTACCATCTCCCTCCTCTGCAGTGTCAC
ATCATTCTAAGGGAAGTAAATCGCTGGATTTACTCACGCAC

ORF - retro_ogar_711 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.7 %
Parental protein coverage: 65.05 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMMGSKMASASRVVQVVKPHAPLIRFPDRRDNPKPNVSEALRSAGLPSHSSTISQHSKGSKSPDLLMY
MMGSK..S.SR..Q...P..PL..F..R.D..KPNVSE..RSA.LPS.SS..S.HSKGSKS.DLL..
RetrocopyMMGSKAVSDSRAIQADQPCTPLMSFSGRGDSLKPNVSET*RSAMLPSPSSAVSHHSKGSKSLDLLTH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.