RetrogeneDB ID: retro_ogar_705

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873526.1:18843185..18844505(+)
• Located in intron of: ENSOGAG00000003331

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZSCAN21
• Ensembl ID: ENSOGAG00000016311
• Aliases: None
• Description: zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:13104]

Sequence

>retro_ogar_705
ATTATGACCAAGGTGGTGAGCATGGCCACCATTTTGTGCCAGAGGCCTCCACAGGAGCAGGTGGGGCCAGTGATTGTGAA
AGCTGAGGAGGAAGAGAAAGGGAAATGCCTTCTTAGCCTAGAGATGTTCCGCCAGCGATTTAGGCAGTTTGGGTACCATG
ACACTCCCAGACCCCAGGAGGCCCTGAGCCAACTCCGTGTGCTGTGCTGTGAGTGGCTGAGGCCTGAGATCCACACCAAG
GAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTAACCATTCTGCCCCAGGAGGTCCAGGCCTGGGTGCAGGATCA
CAGCCCAGAGAGCGTTGAAGAGGCTGTCACTCTCCTCGAAGATCTGGAGCGGGAACACGATGAACCAGGCCACCAGGTCT
CAACTCCTCCAAATGAACAGAAACAAGTGTGGGAGAAGATGTCATCTTCAGGAGGAATAAAAGAATCCCTGAGTAGTGTG
CAGCCACAGCCAGTGGAGACCAGTCACAAGTATGAATCTTGGGGGCCCCTATACATCCAAGAGACTGGTGAGGAACAAGA
TTTCACTCAAGATCCAAGAAAGATTCAAGATTGTAAATTGAATACCCAAAATGAGGAATCAACAAATAAGCAGAAAGGTT
CTGAAGAAGAATCTTGTGCAGATGGACTCAAAAGAGATATCATTCCTGTGAGTTTTGCTAATAAAGGAGAGGCTAGGTTA
GAAAGGCAGTATGTAAATCTTGAAAAGGAAAGAGGAACAAAAACCCTCATTAAAGATAGAGAATCCAAGAAAGGTACAGA
ATCAGTTCCTACTAAACCTACCCCAGGAGAAAGATGTTACATATGTGCTGAGTGTGGAAAAGCCTTCAGCAATAGCTCAA
ATCTTACTAAACACCGGAGAACACACACTGGGGAGAAGCCTTATTTATGCACCAAGTGTGGGAAGGCTTTTAGCCACAGT
TCAAACCTCACCCTCCATTACAGAACACAATTGGTGTACCGGCCCTATGACTGTAAGTGTGGAAAAGCCTTCGGTCAGAG
CTCAGACCTTCTTAAACATCAGAAGATGCATACTGAAGAGGCACCATATCAATGCAAAGATTGTGGAAAGGCTTTCAGTG
ACAAAGGCAGCCTCATTCGCCACTACCGAATCCACACTGGGGAGAAACCGTATTAGTGTAATGAATGTAGGAAGAGCTTC
AGTCAGCATGCAGGTCTTAGTTCACATCAGAGACTCCACACTGGAGAGAAACCATATAAATGTAAGGAATGTGGGAAAGC
CTTCAACCATAGCTCAAACTTTAATAAACATCATAGAATC

Alignment

ORF - retro_ogar_705 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.32 %
• Parental protein coverage: 92.24 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IMTKVLSMATVLSPRPPQEQLGPVIVKAEEEEKGKCLPSLEMFRQRFRQFGYHDTPGPREALSQLRVLCC
          IMTKV.SMAT.L..RPPQEQ.GPVIVKAEEEEKGKCL.SLEMFRQRFRQFGYHDTP.P.EALSQLRVLCC
Retrocopy IMTKVVSMATILCQRPPQEQVGPVIVKAEEEEKGKCLLSLEMFRQRFRQFGYHDTPRPQEALSQLRVLCC

Parental  EWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHSPESAEEAVTLLEDLERELDEPGHQVSTPPNEQ
          EWLRPEIHTKEQILELLVLEQFLTILPQE.QAWVQ.HSPES.EEAVTLLEDLERE.DEPGHQVSTPPNEQ
Retrocopy EWLRPEIHTKEQILELLVLEQFLTILPQEVQAWVQDHSPESVEEAVTLLEDLEREHDEPGHQVSTPPNEQ

Parental  KQVWEKMSSSGGIKESLSSVQPQPVETSHKYESWGPLYIQETGEEQDFTQDPRKIQDCKSNTQTEESTNK
          KQVWEKMSSSGGIKESLSSVQPQPVETSHKYESWGPLYIQETGEEQDFTQDPRKIQDCK.NTQ.EESTNK
Retrocopy KQVWEKMSSSGGIKESLSSVQPQPVETSHKYESWGPLYIQETGEEQDFTQDPRKIQDCKLNTQNEESTNK

Parental  QKGSEEESCADGLKRDIIPVSFANKCEARLERQHVNLEKERGTKTLIKDRGSKKGTESVPTKPTPGERRY
          QKGSEEESCADGLKRDIIPVSFANK.EARLERQ.VNLEKERGTKTLIKDR.SKKGTESVPTKPTPGER.Y
Retrocopy QKGSEEESCADGLKRDIIPVSFANKGEARLERQYVNLEKERGTKTLIKDRESKKGTESVPTKPTPGERCY

Parental  ICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHSSNLTLHYRTHLVDRPYDCKCGKAFGQSSDL
          ICAECGKAFSNSSNLTKHRRTHTGEKPY.CTKCGKAFSHSSNLTLHYRT.LV.RPYDCKCGKAFGQSSDL
Retrocopy ICAECGKAFSNSSNLTKHRRTHTGEKPYLCTKCGKAFSHSSNLTLHYRTQLVYRPYDCKCGKAFGQSSDL

Parental  LKHQRMHTEEAPYQCKDCGKAFSGKGSLIRHYRIHTGEKPYQCNECGKSFSQHAGLSSHQRLHTGEKPYK
          LKHQ.MHTEEAPYQCKDCGKAFS.KGSLIRHYRIHTGEKPY.CNEC.KSFSQHAGLSSHQRLHTGEKPYK
Retrocopy LKHQKMHTEEAPYQCKDCGKAFSDKGSLIRHYRIHTGEKPY*CNECRKSFSQHAGLSSHQRLHTGEKPYK

Parental  CKECGKAFNHSSNFNKHHRI
          CKECGKAFNHSSNFNKHHRI
Retrocopy CKECGKAFNHSSNFNKHHRI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_705 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000006605	1 retrocopy	retro_ogar_12,
Otolemur garnettii	ENSOGAG00000016311	1 retrocopy	retro_ogar_705 ,
Sus scrofa	ENSSSCG00000021941	1 retrocopy	retro_sscr_68,