RetrogeneDB ID:

retro_ogar_672

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:46069669..46070887(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KIF2A
Ensembl ID:ENSOGAG00000000527
Aliases:None
Description:kinesin heavy chain member 2A [Source:HGNC Symbol;Acc:6318]


Retrocopy-Parental alignment summary:






>retro_ogar_672
GCACGTAGGAAATCTAATTGTGTGAAAGAAGTAGAAAAATTGCAAGAAAAACGAGAAAAAAGGAGATTGCAACAGCAAGA
GCTTAGAGAAAAAAGAGCCCAGGATGTCGATGCCACAAATCCAAATTATGAAATTATGTGTATGATCAGAGACTTCAGAG
GAAGTTTGGATTATAGACCCTTAACAACAGCAGATCCCATTGATGAACATAGAATATGTGTTTGTGTAAGAAAACGACCA
CTCAATAAAAAAGAAACTCAAATGAAAGACCTTGATGTAATAACAATCCCTAGTAAAGATGTTGTGATGGTACATGAGCC
AAAACAAAAAGTAGATTTAACAAGGTACCTAGAAAACCAAACATTTCGTTTTGATTATGCCTTTGATGACTCAGCTCCTA
ATGAAATGGTTTACAGGTTTACTGCTAGACCACTAGTGGAAACTATATTTGAAAGAGGAATGGCTACATGCTTTGCTTAT
GGGCAGACTGGCAGTGGAAAAACTCATACTATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAGGAATTTA
TGCACTAGCAGCTCGAGATGTCTTTTTAATGCTAAAGAAGCCAAACTATAAGAAGCTAGAACTTCAAGTATATGCAACCT
TTTTTGAAATTTACAGTGGAAAGGTGTTTGACTTGCTAAATAGAAAAACAAAATTAAGAGTTCTAGAAGATGGAAAACAG
CAGGTTCAAGTGGTGGGATTACAGGAATGAGAGGTCAAATGTGTTGAAGATGTACTAAAACTCATTGACATAGGCAACAG
TTGCAGAACATCCGGTCAAACATCTGCAAATGCTCATTCATCTCGAAGCCAGGCAGTGTTTCAGATTATTCTTAGAAGGA
AAGGAAAACTACATGGTAAATTTTCTCTCATCGATTTGGCTGGAAATGAAAGAGGAGCTGATACTTCCAGTGCAGACAGA
CAAACTAGGCTTGAAGGTGCTGAAATTAATAAAAGCCTTTTAGCGCTCAAGGAGTGCATCAGAGCCTTAGGTAGAAATAA
ACCTCATACTCCTTTCCGAGCAAGTAAACTTACTCAGGTGTTAAGAGATTCATTCATAGGTGAAAACTCACGTACCTGCA
TGATTGCCACAATCTCTCCAGGAATGGCATCTTGTGAAAATACTCTTAATACATTAAGATACGCAAATAGGGTGAAAGAG
CTGACTGTAGATCCAGCC

ORF - retro_ogar_672 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.78 %
Parental protein coverage: 56. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSRRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEH
.RRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEH
RetrocopyARRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEH
ParentalRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTSYLENQTFRFDYAFDDSAPNEMVYRF
RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLT.YLENQTFRFDYAFDDSAPNEMVYRF
RetrocopyRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRF
ParentalTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQV
TARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQV
RetrocopyTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQV