RetrogeneDB ID:

retro_ogar_671

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:45988073..45988485(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BLOC1S2
Ensembl ID:ENSOGAG00000001395
Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:20984]


Retrocopy-Parental alignment summary:






>retro_ogar_671
TCAGCTGTGGTGGAGGGTGTCCCGGCGACCCAGCATGAGGTGCCCACTGGAGATGACGTGGTGCTGGAGACAGCCAGGGA
AGCCAAGGCTCCTGCAGAAGAAGACACCACTGAGCTCGGCCGGGACGTGCTTTCCCAAATGGCCATGTACCTGACAGGGG
AACTGATGGCCACCAGTGAAGACGATAAGGTGCTTGAAAATATGAATAAGCTCACCAGCTCGAAGTATCCTGAAATGAAT
GACATTGCTGTAATAGCAGAAACTTGAAGGACTTTAAAGCAGAAACATGGCCGATCGCAGCCTTATCAGGGTCAGATCAA
GGTCACAGAGGTGGTGGCAGCTCCTGAGCAGGCAGCTTGTAAGTTGAATGCACATTTAAAAAAGGCTGGAAGCCAAGTAC
AAGAAGCTGGAG

ORF - retro_ogar_671 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.14 %
Parental protein coverage: 97.89 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAAAAEGVPAPRREEPARDDAAVETAEEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNK
.A..EGVPA...E.P..DD...ETA.EAK.PAE.D..EL.RD..S.MA.YLTGEL.ATSED.K.LENMNK
RetrocopySAVVEGVPATQHEVPTGDDVVLETAREAKAPAEEDTTELGRDVLSQMAMYLTGELMATSEDDKVLENMNK
ParentalLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKK-LEAKYKKLE
LTS.KY.EM.DIA..I......L.QK....QPY..QI.V..E.VAA.EQAA.KL.A..KK.LEAKYKKLE
RetrocopyLTSSKYPEMNDIAV-IAET*RTLKQKHGRSQPYQGQIKV-TEVVAAPEQAACKLNAHLKK>LEAKYKKLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.