RetrogeneDB ID: retro_ogar_623

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:16168460..16169496(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GMPR2
• Ensembl ID: ENSOGAG00000016593
• Aliases: None
• Description: guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:4377]

Sequence

>retro_ogar_623
ATGTTTTATATCAACAACGATGTGAAACTGGACTTCAGGGATGTCTTGTTGAGGCCCAAATGCAACACCCTTAAGTCTTG
AAGTGAGGTGTATCTCACAAGATCCTTTACATTTCATAATTCAAAGCAGATATACACTGGGATCCCCATCATTGCCTCCA
ATATGGATACTGTGGGCACCTTTGAGATGGCCAAGGCTCTCTGTAAGTTCCCCCTCTTCACTGCTGTCCATAAGCACTAC
AACCTCGATCAGTGGCAAGAGTTTGCTAGACAAAATCCTGACTGTCTTGAGCATCTGGCTGCCAGCTCAGGCACAGGCTC
TTTTGACTTTGAGCATCTGGAACAGATCTTGGAAACTATTCCCCAAGTGAACTATCTATGCCTGGATGTGGCAAACGGCT
ATTCTGAACACTGTGTTGAATTTGTGAAGGATTTGCGGAAGTGTTTCCCCCAACACACCATAATGGCCGAGAATGTGGTA
ACAGGAGAAATGGTGGAAGAGCTAATTCTCTCTGGGGCTGACATCATCAAAGTGGGAATTGGGTCAGGCTCTGTGTGTAC
CACTCGCAAGAAGACTGGAGTGAGGTATCCACAGCTCAGTGCAGTGATGGAGTGTGGGGATGCTGCTCATGGCCTTAATG
GTCACATCATTTCAGATGGAGGCTACAGCTGTCCTGGGGATATGGCCAAGGCTTGGGGGGCAGGGGCTGATTTCGTGATG
CTGGCTGGGCACAGTGAGTCAGGTGGTGAGCTCACTGAGAAGAATGGCAAAAAGTACAAACTCTTTTATGGAATGAGTTC
TGAAATGGCCATGAAGAAGTATTATTGAAGCATGGCTGAGTACAGGGCCTCAGAGGGAAAGGCAGTGGTGGAAATTCCCT
TTAAAGGGGATGTGGAACATACCGTCCAAGACATTCTAGAAGGGATTCGCTATACGTGTACTTATGTGGGAGTAGCTCAG
CTGAAGGAGTTGAGCCACAGAACTACCTTTAATCCAAGTCACCCAGAAGCTGAATCCAATGTTCAGTGATGAGCAC

Alignment

ORF - retro_ogar_623 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.22 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSHIDNDVKLDFKDVLLRPKRNTLKSRSEVDLTRSFTFRNSKQMYTGIPIIASNMDTVGTFEMAKVLCKF
          M..I.NDVKLDF.DVLLRPK.NTLKS.SEV.LTRSFTF.NSKQ.YTGIPIIASNMDTVGTFEMAK.LCKF
Retrocopy MFYINNDVKLDFRDVLLRPKCNTLKS*SEVYLTRSFTFHNSKQIYTGIPIIASNMDTVGTFEMAKALCKF

Parental  SLFTAVHKHYSLDQWQEFARQNPDCLEHLAASSGTGSFDFERLEQILEAIPQVNYICLDVANGYSEHFVE
          .LFTAVHKHY.LDQWQEFARQNPDCLEHLAASSGTGSFDFE.LEQILE.IPQVNY.CLDVANGYSEH.VE
Retrocopy PLFTAVHKHYNLDQWQEFARQNPDCLEHLAASSGTGSFDFEHLEQILETIPQVNYLCLDVANGYSEHCVE

Parental  FVKDLRTRFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGSGSVCTTRKKTGVGYPQLSAVMECADAAH
          FVKDLR..FP.HTIMA.NVVTGEMVEELILSGADI.KVGIGSGSVCTTRKKTGV.YPQLSAVMEC.DAAH
Retrocopy FVKDLRKCFPQHTIMAENVVTGEMVEELILSGADIIKVGIGSGSVCTTRKKTGVRYPQLSAVMECGDAAH

Parental  GLNGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELTEKNGKKYKLFYGMSSEMAMKKYYQ
          GLNGHIISDGG.SCPGD.AKA.GAGADFVML.G....HSESGGELTEKNGKKYKLFYGMSSEMAMKKYY.
Retrocopy GLNGHIISDGGYSCPGDMAKAWGAGADFVMLAG----HSESGGELTEKNGKKYKLFYGMSSEMAMKKYY*

Parental  SMAEYSLRASEGK-TVEIPFKGDVEHTIRDILGGIRSTCTYVGAAQLKELSRRTTF-IRVTQQLNPMFSD
          SMAEY..RASEGK..VEIPFKGDVEHT..DIL.GIR.TCTYVG.AQLKELS.RTTF.I.VTQ.LNPMFSD
Retrocopy SMAEY--RASEGKAVVEIPFKGDVEHTVQDILEGIRYTCTYVGVAQLKELSHRTTF>IQVTQKLNPMFSD

Parental  EH
          EH
Retrocopy EH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_623 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000016593	1 retrocopy	retro_ogar_623 ,
Ictidomys tridecemlineatus	ENSSTOG00000002336	1 retrocopy	retro_itri_1331,