RetrogeneDB ID: retro_ogar_62

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873533.1:11250984..11251731(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024651
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000025133
• Aliases: None
• Description: None

Sequence

>retro_ogar_62
ATGGCTGGGATCACCACCATTGAGGCGGTGAAGCGCAAGATCCAAGTTCTGCAGCAGCAGGCCGATGATGCAGAGGAGAG
AGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCCGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAGGAGCTGGATCGTGCCCAAGAGCGCCTAGCCACTGCCTTGCAAAAATTGGAGGAAGCG
GAAAAAGCTGCTGACGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAAAAGATGGAACT
CCAAGAAATCCAGCTCAAAGAAGCGAAACATATTGCAGAAGAGGCAGATAGGAAATATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAAGGAGACTTAGAACGCACAGAGGAACGAGCTGAGCTGGCGGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGCGCTGCTGAAGAAAAGTATTCTCAAAAAGAAGACAAATATGAGGA
AGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGATTTGGAAGATAAACTGAAATGTACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAG
ACTCTGCTTGACCTGAATGAGATGTAG

Alignment

ORF - retro_ogar_62 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.8 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQTQAEAEVASLNRRIQLVEEELDRAQE
          MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ..AEAEVASLNRRIQLVEEELDRAQE
Retrocopy MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQ--AEAEVASLNRRIQLVEEELDRAQE

Parental  RLATALQKLEEAEKAADESERGMRRYRPHALWLXKKKILSQTQAAKAPATYTELTGLNPAVAHQTSMTSA
          RLATALQKLEEAEKAADESERGM......AL....K..L...Q...A.....E.......VA........
Retrocopy RLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEG

Parental  ILEELEEIASDIHSKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAER
          .LE..EE.A....S.C.E..E.......NLK.L.A..EKYSQKEDKYEEEIKILTDKLKEAETRAEFAER
Retrocopy DLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAER

Parental  SVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM
          SVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM
Retrocopy SVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_62 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000010990	8 retrocopies	retro_nleu_1133, retro_nleu_2050, retro_nleu_2119, retro_nleu_2141, retro_nleu_2387, retro_nleu_2523, retro_nleu_921, retro_nleu_922,
Otolemur garnettii	ENSOGAG00000011793	1 retrocopy	retro_ogar_988,
Otolemur garnettii	ENSOGAG00000025133	1 retrocopy	retro_ogar_62 ,
Pongo abelii	ENSPPYG00000000787	2 retrocopies	retro_pabe_1230, retro_pabe_3263,