RetrogeneDB ID: retro_ogar_60

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873776.1:499548..499986(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000030314
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002870
• Aliases: None
• Description: None

Sequence

>retro_ogar_60
AGGAGCCATATATCGAAGACAATGTCTGGAAGCTTCTACTTCGTAATTGTGGGCCACCATGATAATCCAGTTTTTGAAAT
GGAGTTTTTGTCAGCTGAGAAAGCGGAATCCAGAGACGACCACCGTTATCTGAACCAGTTCATAGCTCATGCTGCTCTCG
ACCTGGTGGATGAGAACATGTGGCTGTCAAACAACATGTACTTAAAGACTGTGGACAAATTCAGTGAGTGGTTTGTGTCG
GCGTTTGTCACTACCGGGCATGTGAGATTTATTATGCTGCATGACATAAAGCAAGAAGACGGAATAAAGAACTTCTTTAC
TGATGTCTATGATTTATATATAAAGTTTGCAATGAATCCGTTTTATGAACCCAATTCTCTCATTCAATCAAGTGCATTTG
ACAGAAAAGTTCAATTCCTTGGGAGGAAATACCTTTTA

Alignment

ORF - retro_ogar_60 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.41 %
• Parental protein coverage: 99.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSHILKTMSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKT
          RSHI.KTMSGSFYFVIVGHHDNPVFEMEFL.A.KAES.DDHR.LNQFIAHAALDLVDENMWLSNNMYLKT
Retrocopy RSHISKTMSGSFYFVIVGHHDNPVFEMEFLSAEKAESRDDHRYLNQFIAHAALDLVDENMWLSNNMYLKT

Parental  VDKFNEWFVSAFVTAGHI-FIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFL
          VDKF.EWFVSAFVT.GH..FIMLHDI.QEDGIKNFFTDVYDLYIKFAMNPFYEPNS.I.SSAFDRKVQFL
Retrocopy VDKFSEWFVSAFVTTGHVRFIMLHDIKQEDGIKNFFTDVYDLYIKFAMNPFYEPNSLIQSSAFDRKVQFL

Parental  GKKHLL
          G.K.LL
Retrocopy GRKYLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_60 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000001719	1 retrocopy	retro_acar_53,
Canis familiaris	ENSCAFG00000011754	2 retrocopies	retro_cfam_1608, retro_cfam_368,
Homo sapiens	ENSG00000196459	1 retrocopy	retro_hsap_73,
Microcebus murinus	ENSMICG00000004690	1 retrocopy	retro_mmur_1022,
Macaca mulatta	ENSMMUG00000022619	1 retrocopy	retro_mmul_326,
Monodelphis domestica	ENSMODG00000017312	2 retrocopies	retro_mdom_1737, retro_mdom_1901,
Mus musculus	ENSMUSG00000079317	2 retrocopies	retro_mmus_198, retro_mmus_2522,
Otolemur garnettii	ENSOGAG00000002870	2 retrocopies	retro_ogar_369, retro_ogar_60 ,
Pan troglodytes	ENSPTRG00000021674	1 retrocopy	retro_ptro_72,
Sorex araneus	ENSSARG00000006353	1 retrocopy	retro_sara_244,
Ictidomys tridecemlineatus	ENSSTOG00000025097	1 retrocopy	retro_itri_1014,