RetrogeneDB ID:

retro_ogar_514

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873522.1:23260307..23260700(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZFAND1
Ensembl ID:ENSOGAG00000009813
Aliases:None
Description:zinc finger, AN1-type domain 1 [Source:HGNC Symbol;Acc:25858]


Retrocopy-Parental alignment summary:






>retro_ogar_514
TTTCTTCCATTTATTTGTGATGGAATACTCTACCTTGAACATAGAAGCAAGGAGTTTATGATTTTCCTGAGGTGACTATA
ATCAATGAAAAACTAAAGACAGATGAGCATAAGTCTTACCCATGCTGATTCAAGGACTGTGTTGAAAGAGAACTTGCGGC
AGTTACATAATCTTATTGTGGAAACTTTTGCCTAAGACACTATCATCAGTCAGATCACGAATGTAAAAAACTGGAAATCC
TAAAGCCTCATATAGCCGCCACCCAAAAACTTCTTAAAGACATTATTGAGTCCAAGACAACAAGTAAACGATAAAAAAGG
TGCAAAAAATAGTGAAACAGCTACAAAAATTCCATTGATGAAATTAAAGATTCATGCTGATGGGGGTGACTCT

ORF - retro_ogar_514 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.14 %
Parental protein coverage: 51.49 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFLPFICDGCSGIFCLEHRSKES-HGCPEVTIINERLKTDNHKSYPCSFKDCGERELVAVLCPYCEKNFCL
FLPFICD...GI..LEHRSKE.....PEVTIINE.LKTD.HKSYPC.FKDC.EREL.AV...YC..NFCL
RetrocopyFLPFICD---GILYLEHRSKEF<YDFPEVTIINEKLKTDEHKSYPC*FKDCVERELAAVT*SYCG-NFCL
ParentalRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETTSKR-RKGAKNSQTAAKVALMKLKMHADGDKS
RH.HQSDHEC.KLEI.KP..AATQKL.KDII.SKT...TSKR..KGAKNS.TA.K..LMKLK.HADG..S
RetrocopyRHYHQSDHECKKLEILKPHIAATQKLLKDIIESKT---TSKR>KKGAKNSETATKIPLMKLKIHADGGDS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.