RetrogeneDB ID:

retro_ogar_390

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873520.1:38471174..38471570(-)
Located in intron of:ENSOGAG00000003407
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C6orf203
Ensembl ID:ENSOGAG00000008839
Aliases:None
Description:chromosome 6 open reading frame 203 [Source:HGNC Symbol;Acc:17971]


Retrocopy-Parental alignment summary:






>retro_ogar_390
TCTCCTGAATATATATTTCCATTTTCCATAAGACTGAAAAGTAATGTAAATCTAAAAATCCACTAAAAAGTCTCTACTAA
AAGTAGGAGATAAAGAGGACTGTGATCCAGAGGAGGGTCATGACAAAATGAGTGAGCCAGAAGAGGAGCTTGAAGATGAC
CCTGGTATGGTCAGAGACTATATAAAGACCTGGAAAAAGTGCCATCGTTTTGGTATGATGTTATCTTGAAGACAGGCCTA
GATATTGGGAGGAACAAAGTGGAAAATGCATTCTTCAAAGGTGAACTCAGGCTGAATGGGGAAAAATTATGGAAGAAAAG
CAGAACAGTGAAAAGGGGAGATATATTGGATCTTCTCATTGAAGGGGATAAAGAAGCAGGAATAGACAATAATATG

ORF - retro_ogar_390 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.26 %
Parental protein coverage: 56.12 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalSPEHIFPFFIRPKSNVS-SKN-STKKSPQKVEDEEDSDTEKDRDEMSEA-EEELEDDSGV-VRDYKDLEK
SPE.IFPF.IR.KSNV..SKN.STKKS..KV.D.ED.D.E...D.MSE..EE...D...V..R.YKDLEK
RetrocopySPEYIFPFSIRLKSNVN<SKN<STKKSLLKVGDKEDCDPEEGHDKMSEPEEELEDDPGMV<QRLYKDLEK
ParentalAVPSFRYDVILKTGLDIGRNKVEDAFYKGELRLNGEKLWKKSRTVKVGDTLDLLIEGNKEAGTETVM
.VPSF.YDVILKTGLDIGRNKVE.AF.KGELRLNGEKLWKKSRTVK.GD.LDLLIEG.KEAG....M
Retrocopy-VPSFWYDVILKTGLDIGRNKVENAFFKGELRLNGEKLWKKSRTVKRGDILDLLIEGDKEAGIDNNM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.