RetrogeneDB ID: retro_ogar_380

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:30265567..30266316(-)
• Located in intron of: ENSOGAG00000000960

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: B5FWB3_OTOGA
• Ensembl ID: ENSOGAG00000006950
• Aliases: None
• Description: Leukocyte receptor cluster member 1 (Predicted) [Source:UniProtKB/TrEMBL;Acc:B5FWB3]

Sequence

>retro_ogar_380
ATGAATATTTTGCCCAGGAAGAGCTGGCATGCCAGAACAAGGACAATGTTGCCCATGTACACTGTGATGAGGCCTGGGCC
TGGGAGGAGGAGGAGGAGCATGAGCGAGAGTGCTGCTCGCTGAGCAAGAGGCCCGCACAGAATTTCTACGGAAGAAAGCT
AGACATCAGAACTCACTGCCTGAGCGTTACGCAGGAGCCCCAAGTTCTGGCTCTGTGGACTTGTCAGGAGCTTCTGGAGG
AAGGGAAAGGGGTGACCAGAGGCAATAAAGAGTATGAAGAAGAAAAGAAACAGGAGAAAGAAAGGCAAGAGAAAGCTCTG
GGCATCTGACATACCTGGGCCAGAGTGCAGCAGGGGCCCAGACACAACCCCCTTGTTACCACCTCCCCCCAGGACGGGGA
GGCCTCTCACCCGGCCCAAGCCCAGATGAGAAGGTCAAGAGTCGCCTGGACTCTTTGCAGGACATGCAAAAGCATTTGGG
GAAGAGAAGGCACAATGGTGATGAAGGCAATCACAACAGAAACGAAAAGGAGGGGCCTGAGAAACAGCAGCCCAAGGAAA
CTCCATCCCGGGACCAGCTTCAAGCTTGAACGTCTTCAGAGGGAAACAGCCAAGAGGGCTCGGGCAGAAGCCCTCTTGGC
TCAGGTCCAAGGCCAAGCACATGAGGGTCAGCTGGAGGAGGAAGGGACAGATGACCGGTGGCAGTATAACTCCCAGTTCA
ACCCCCAGCTGGCCCGGTGCCCCCGACGA

Alignment

ORF - retro_ogar_380 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.62 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  MNILPKKSWHVR-NKDNVARVRRDEARAREEEKERER-RVLLAEQEARTEFLRKKARHQNSLPELEAGAS
          MNILP.KSWH.R.NKDNVA.V..DEA.A.EEE.E.ER.RVLLAEQEARTEFLRKKARHQNSLPE..AGA.
Retrocopy MNILPRKSWHAR<NKDNVAHVHCDEAWAWEEEEEHER<RVLLAEQEARTEFLRKKARHQNSLPERYAGAP

Parental  SSGPVD-LFRELLEEGK-GVTGGNKEYEEEKRQEKERQEKALGI-LTYLGQSAAEAQTQPPWYQLPPGRG
          SSG.VD.L.R.....GK.GVT.GNKEYEEEK.QEKERQEKALGI.LTYLGQSAA.AQTQPP.Y.LPPGRG
Retrocopy SSGSVD<LVRSFWRKGK<GVTRGNKEYEEEKKQEKERQEKALGI<LTYLGQSAAGAQTQPPCYHLPPGRG

Parental  GLSPGPSPDEKVKSRLDPLREMQKHLGKRRRDGDEGIHNRNKKEGPEKQRPKETPSLDQLRA-ERLRRER
          GLSPGPSPDEKVKSRLD.L..MQKHLGKRR..GDEG.HNRN.KEGPEKQ.PKETPS.DQL.A.ERL.RE.
Retrocopy GLSPGPSPDEKVKSRLDSLQDMQKHLGKRRHNGDEGNHNRNEKEGPEKQQPKETPSRDQLQA>ERLQRET

Parental  AERARAEALLARIQGQAHEGQLEEEETDDRRRRYNSQFNPQLARRPRR
          A.RARAEALLA..QGQAHEGQLEEE.TDD.R..YNSQFNPQLAR.PRR
Retrocopy AKRARAEALLAQVQGQAHEGQLEEEGTDD-RWQYNSQFNPQLARCPRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_380 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000006950	1 retrocopy	retro_ogar_380 ,