RetrogeneDB ID: retro_ogar_378

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:28574682..28575092(-)
• Located in intron of: ENSOGAG00000027043

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: B4USU8_OTOGA
• Ensembl ID: ENSOGAG00000013336
• Aliases: None
• Description: ADP-ribosylation factor 5 (Predicted) [Source:UniProtKB/TrEMBL;Acc:B4USU8]

Sequence

>retro_ogar_378
TTGGTTGGTTTGAATGAGACTGACAAGACCGGAATCTTATATAAACTCAAGCTGGGGGAGAATGCCACCACCACTCCAAC
CACAGGCGTCAACGTAGAAACAGTGGAATGTAGAACATCTGTTTCAAGGATGGGATGTGGGAGGACAGGACAAGACTAGG
CTTCTGCGATGGCTCTACATCCAGAACCCTCAGGGGTCATCTTTGTGATAGACAATCATGAATAGGAGTAGATCCAGGAA
TCTGCTGATGAACTCCAGAAGATGCTACAGAGCATGAGCTGTGAAATTCAGTGTTGCTGGTGTTTGACAACAAGCAGAAC
ATGCCCAATGCCAGGCCCACTAATAAGCTGTAGCTACAGCATTTGCACAGCTGCACGTGGTATATCCAGTGCCAGGCCAG
TAGGATGGGC

Alignment

ORF - retro_ogar_378 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.64 %
• Parental protein coverage: 78.89 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NIC-FTVWDVGGQDKIRPLWRHYFQNTQ-GL
          .VGL....KT.ILYKLKLGE..TT.PT.G.NVETVE...NIC.F..WDVGGQDK.R.L...Y.QN.Q.G.
Retrocopy LVGLNETDKTGILYKLKLGENATTTPTTGVNVETVECR<NIC<FQGWDVGGQDKTRLLRWLYIQNPQ<GV

Parental  IFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA
          IFV.D....E..QESADELQKMLQ.E.EL...VLLVF.NKQ.MPNA.P....T.KL.LQHL.S.TWY.Q.
Retrocopy IFVIDNHE*E*IQESADELQKMLQ<EHEL*NSVLLVFDNKQNMPNARP----TNKL*LQHLHSCTWYIQC

Parental  TCATQG
          .....G
Retrocopy QASRMG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_378 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona intestinalis	ENSCING00000021790	1 retrocopy	retro_cint_10,
Dasypus novemcinctus	ENSDNOG00000013387	5 retrocopies	retro_dnov_1132, retro_dnov_1251, retro_dnov_1260, retro_dnov_1407, retro_dnov_2319,
Gorilla gorilla	ENSGGOG00000016749	1 retrocopy	retro_ggor_1016,
Monodelphis domestica	ENSMODG00000015229	1 retrocopy	retro_mdom_905,
Otolemur garnettii	ENSOGAG00000002503	1 retrocopy	retro_ogar_263,
Otolemur garnettii	ENSOGAG00000010974	4 retrocopies	retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Otolemur garnettii	ENSOGAG00000012034	4 retrocopies	retro_ogar_1407, retro_ogar_1501, retro_ogar_2963, retro_ogar_764,
Otolemur garnettii	ENSOGAG00000013336	1 retrocopy	retro_ogar_378 ,
Tursiops truncatus	ENSTTRG00000006043	1 retrocopy	retro_ttru_493,