RetrogeneDB ID: retro_ogar_3451

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873849.1:225360..226255(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP7
• Ensembl ID: ENSOGAG00000032809
• Aliases: None
• Description: dual specificity phosphatase 7 [Source:HGNC Symbol;Acc:3073]

Sequence

>retro_ogar_3451
AGAGAAAGTTTCCACACGCGCTGCAAGGCGGCCACCGTGCTGCTGGAGGATTAGGCCAAGGCCGAGTGGCAGCCCCAACC
CAGCGCTCCAGCCTCAGTGCCCGGTCTGCTGCTACACAAGCTGCGTGACGATGGCTGCCAGGCCTACTACCTCCAAGGTG
GTTTCAATAAGTTCCAAACAGAGTCTTCAGAGCCCTGAGAGGCCAAAGAGGACAGCTGGTCCTCACCTAGTAGCTCGCCA
CCCACCTCTGTGCTAGGCCTGGGGGGTCTAGGCATCAGCTCTGACTGCTGGTTCTATAAGTCAGACCCAGAGCTGCCTAG
CAGTGCCACTGAGTCGGATGGCAGCCCTGTGCCATCTAGCCAACCAGCCTTCCCTGACCAGATCCTACCCTACCTCTACC
TGGGCTGCACCAAGGACACCACCAATCTGGACGTGCTTGGCAAGTACAGCATCAAGTATTTCCTCGATGTCATAACCAGC
TTACCCAATGCCTTCTAGCATGGTGGCGAGTTCACCTACAAGCAGACCCCCAATCTCTGACCACTGGAGCCAGAACCTCT
CCTGGTTCTTCCCTGAGGCCGTCAACTTAATTGGCGAGGCCTGCTCCAGGAAGTGTAGTGTCCTGGAGCACTGCCTGGCA
GGCATCAGCCACTCAGTGAGAGTTACTGTGGCCTAGCTGATGCAGAAGATGAACCTGTCACTCAGTGATGCCGTGACTTT
GTCAAGAGGAAAAAGTCCAACATCTCCCCCAACTTCAACTTCATGTGGCAGCTGCTGGACTTTGAGTGGACGCTGGGGCC
AAGCAGCCCATGCCACAACCATGCTGCCCAGTGAGCAGCTCTACTTCTCCACACCCACCAATCACAACCTGTTCCCACTC
AATACGCTCCAGTCC

Alignment

ORF - retro_ogar_3451 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.4 %
• Parental protein coverage: 80.98 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KERFATRCKAATVLLYDEATAEWQPEPGAPASVLGLLLQKLRDDGCQAYYLQGGFNKFQTEYSEHCETNV
          .E.F.TRCKAATVLL.D.A.AEWQP.P.APASV.GLLL.KLRDDGCQAYYLQGGFNKFQTE.SE..E...
Retrocopy RESFHTRCKAATVLLED*AKAEWQPQPSAPASVPGLLLHKLRDDGCQAYYLQGGFNKFQTESSEP*EAKE

Parental  DSSSSPSSSPPTSVLGLGGLRISSDCSDGESDRELPSSATESDGSPVPSSQPAFPVQILPYLYLGCAKDS
          DS.SSPSSSPPTSVLGLGGL.ISSDC....SD.ELPSSATESDGSPVPSSQPAFP.QILPYLYLGC.KD.
Retrocopy DSWSSPSSSPPTSVLGLGGLGISSDCWFYKSDPELPSSATESDGSPVPSSQPAFPDQILPYLYLGCTKDT

Parental  TNLDVLGKYGIKYILNVTPNLPNAFEHGGEFTYKQI-PISDHWSQNLSQFFPEAISFIDEARSKKCGVLV
          TNLDVLGKY.IKY.L.V...LPNAF.HGGEFTYKQ..PISDHWSQNLS.FFPEA...I.EA.S.KC.VL.
Retrocopy TNLDVLGKYSIKYFLDVITSLPNAF*HGGEFTYKQT>PISDHWSQNLSWFFPEAVNLIGEACSRKCSVLE

Parental  HCLAGISRSVTVTVAYLMQKMNLSLNDAY-DFVKRKKSNISPNFNFMGQLLDFERTLGLSSPCDNHA-PS
          HCLAGIS.SV.VTVA.LMQKMNLSL.DA..DFVKRKKSNISPNFNFM.QLLDFE.TLG.SSPC.NHA.PS
Retrocopy HCLAGISHSVRVTVA*LMQKMNLSLSDAV<DFVKRKKSNISPNFNFMWQLLDFEWTLGPSSPCHNHA>PS

Parental  EQLYFSTPTNHNLFPLNTLES
          EQLYFSTPTNHNLFPLNTL.S
Retrocopy EQLYFSTPTNHNLFPLNTLQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3451 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000032809	3 retrocopies	retro_ogar_3403, retro_ogar_3451 , retro_ogar_3473,