RetrogeneDB ID: retro_ogar_3424

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873828.1:456093..456786(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DAO
• Ensembl ID: ENSOGAG00000033977
• Aliases: None
• Description: D-amino-acid oxidase [Source:HGNC Symbol;Acc:2671]

Sequence

>retro_ogar_3424
CTGACCCCCAGAGAACTGGACATGTTCCCTGATTATAGCTATGGCTGGTTCAACACAAGCCTAATTCTGGAGGGAAAGAC
CTATCTGCAGTGGCTGATCAAAAGTTTAACTGAGAAGGGAGTAAAATCCTTCCAGCAGAAGGTGGAGTCTTTTGAGGAGG
TGGCAAGAGGAGGTGCATATGTGATTCTTAACTGCACTGGGGTGTGGGCAGGGGCCCTGCAACCAGACCCCCTGCTGCAG
CCAGGCCTGGGGCAGATCATTAAGGTGGCTGCTCCTTGGATGAAACACTTCATTATTACTCATGAACCAGAGCATGCCAT
CTACAGGTCCCCATACATCATCACAGGGACCCAGACAACTACTCTTGGAGGCATCTTCCAGCTCGGGAATTGGAGTGAAC
TAAACAATATCCAGGACCACAACACCATTTGGTAAGACTGCTGTAGACTGGAACCTAAAGTAAAGGATGTAAGAATTATT
AGTGAATTTACTGGCTTGAGGTCAGTACGCCCCTAGATTTGGCTGGAAAGAGAACAACTTCACATTGGACTTTCAAACAC
AGAGGCCATCCACAACTATGGCCATGGAGGGAACGGGCTCACCATCCACTGGGGCTATGCCCTGGAGGCAGCCAAGCTCT
TTGGGAAGATCCTGGAAGAAAAAAACTTGTCCAAGGTGCTACCATCCCACCTC

Alignment

ORF - retro_ogar_3424 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.79 %
• Parental protein coverage: 65.62 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LKPKVSPIIVDFSYGWFNTSLILEGKTYLQWLTKRLIEKGVKFFQRKVESFEEVARGGADVIVNCTGVWA
          L.P.......D.SYGWFNTSLILEGKTYLQWL.K.L.EKGVK.FQ.KVESFEEVARGGA.VI.NCTGVWA
Retrocopy LTPRELDMFPDYSYGWFNTSLILEGKTYLQWLIKSLTEKGVKSFQQKVESFEEVARGGAYVILNCTGVWA

Parental  GALQPDPLLQPGRGQIIKVDAPWMKHFIITHEPEHGIYTSPYIIPGARTTTLGGIFQLGNWSELNNIQDH
          GALQPDPLLQPG.GQIIKV.APWMKHFIITHEPEH..............TTLGGIFQLGNWSELNNIQDH
Retrocopy GALQPDPLLQPGLGQIIKVAAPWMKHFIITHEPEHXXXXXXXXXXXXXXTTLGGIFQLGNWSELNNIQDH

Parental  NTIWEGCCRLDPTLKDARIVSEFTGLRPVRPQIRLEREQLRIGPSNTEVIHNYGHGGYGLTIHWGCALEA
          NTIW..CCRL.P..KD.RI.SEFTGLR.VRP.I.LEREQL.IG.SNTE.IHNYGHGG.GLTIHWG.ALEA
Retrocopy NTIW*DCCRLEPKVKDVRIISEFTGLRSVRP*IWLEREQLHIGLSNTEAIHNYGHGGNGLTIHWGYALEA

Parental  AKLFGKILEEKKLSRVLPSHL
          AKLFGKILEEK.LS.VLPSHL
Retrocopy AKLFGKILEEKNLSKVLPSHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3424 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000033977	1 retrocopy	retro_ogar_3424 ,