RetrogeneDB ID: retro_ogar_3340

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873783.1:1074092..1075034(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000014524
• Aliases: None
• Description: None

Sequence

>retro_ogar_3340
ATGATTGTACAAAGAGCGGTATTGAATTCCTGATCTGGAAAAAATGGTAATCCAGTGGCAGAGAATTTCCAAAGGGAAGA
AGTCACTTTGCCAGATAATATCAATGAAAGACAAGTACAAGTTAGAACTCTTTATCTTTCTGTGGATCCTTACATGCATT
GCAGAATGAATGAAGACACTGGCACTGATTATATAACACCTTGGCAGCTGTCTCAAGTGGTTGATGGTGGAGGTATTGGA
ATTATAGAAGAAAGCAAACACATAAATTTAACTACAGGCAATTTTGTGACTTCTTTTTATTGGCCTTGGCAAACCAAGGT
TATTCTGGATGGAAATAGCCTTGAAAAGGTCGACCCACAACTTATGGATGGACACCTTTCATATTTTCTTGGAGCTGCAG
GAATACCTGGTTTGACTTCCTTGATTGGAATATAGGAATAAGGTCATATAACTGCTGGATCTAATCAGACAGTGGTTGTC
AGTGAGGCTGCAGGTGCCTGTGGATCCTTGGCTGGGCAGATTGGCCATTTGCTGGGTTGTTCCAGAGTGGTAGGAATTTG
TGGAACACATGAGAAATGCCTACTTTTGACCTCTGAACTTGGCTTTGATGCTGCAAGTAATTATTAAAAAGGAAATATGG
CAGAACAACTCCATGAATTATGCCCAGGTGGACTGGATATTTATTTTGAAAATGTTGGTGGTGACATCAGTGATAAAGTG
ATAAGTCAGATGAATCAGAACAGCCACATTATCCTATGTGGTCAAATTTCTCAGTACAACAAAGATGTGCCTTATCCTCT
GCCACTGCCCCATGCAATAGAGGCAGTTCAGAAAGAAAGATACATCACAAGAGAAAGATTTCTGGTGTTAAATTATAAGG
ACAAATTTGAACCTGGCATTCTACAGCTGAGTCAATGGTTTAAAGAAGGAAAATTACAAATA

Alignment

ORF - retro_ogar_3340 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.49 %
• Parental protein coverage: 89.46 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MIVQRVVLNSRPGKNGNPVAENFRMEEVTLSDNINEGQVRVRTLYLSVDPYMRCRMNEDTGTDYITPWQL
          MIVQR.VLNS..GKNGNPVAENF..EEVTL.DNINE.QV.VRTLYLSVDPYM.CRMNEDTGTDYITPWQL
Retrocopy MIVQRAVLNS*SGKNGNPVAENFQREEVTLPDNINERQVQVRTLYLSVDPYMHCRMNEDTGTDYITPWQL

Parental  SQVVDGGGIGIIEESKHINLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTS
          SQVVDGGGIGIIEESKHINLT.G.FVTSFYWPWQTKVILDGNSLEKVDPQL.DGHLSYFLGA.G.PGLTS
Retrocopy SQVVDGGGIGIIEESKHINLTTGNFVTSFYWPWQTKVILDGNSLEKVDPQLMDGHLSYFLGAAGIPGLTS

Parental  LIGIQEKGHITAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLLLTSELGFDNAINYKK
          LIGI.E.GHITAGSNQT.VVS.AAGACGSLAGQIGHLLGCSRVVGICGTHEKCLLLTSELGFD.A.NY.K
Retrocopy LIGI*E*GHITAGSNQTVVVSEAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLLLTSELGFDAASNY*K

Parental  GNVAEQLHELCPAGVDIYFDNVGGDISDKVISQMNQNSHIILCGQISQYNKDVPYPPPLPPTIEAVQKER
          GN.AEQLHELCP.G.DIYF.NVGGDISDKVISQMNQNSHIILCGQISQYNKDVPYP.PLP..IEAVQKER
Retrocopy GNMAEQLHELCPGGLDIYFENVGGDISDKVISQMNQNSHIILCGQISQYNKDVPYPLPLPHAIEAVQKER

Parental  NITRERFMVLNYKDRFEPGILQLSHWFKEGKLKI
          .ITRERF.VLNYKD.FEPGILQLS.WFKEGKL.I
Retrocopy YITRERFLVLNYKDKFEPGILQLSQWFKEGKLQI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3340 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003747	1 retrocopy	retro_btau_1409,
Echinops telfairi	ENSETEG00000005782	1 retrocopy	retro_etel_216,
Otolemur garnettii	ENSOGAG00000011144	1 retrocopy	retro_ogar_2834,
Otolemur garnettii	ENSOGAG00000014524	1 retrocopy	retro_ogar_3340 ,