RetrogeneDB ID:

retro_ogar_3267

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873759.1:348025..348607(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000026435
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CCDC53
Ensembl ID:ENSOGAG00000003322
Aliases:None
Description:coiled-coil domain containing 53 [Source:HGNC Symbol;Acc:24256]


Retrocopy-Parental alignment summary:






>retro_ogar_3267
ATGGATGAGGACAGGCTGCCTCTCATGGGGTCAGGCATAGACTTGACCAAGGTGCCAGCTATTCAACAGAAAAGAACAGT
GGCTTTTCTAAACCAATTTGTGGTACACACTATGCAGTTCCTCAACCATTTTTCTACAGTTTGTGAGGAGAAACTGGCAG
GCCTTTCTCTTCGTATCCAACAAATTGAAACAACTCTCAATATTTTAGATGCAAAGTTATCATCTATTCTAGGCCTAGAT
GATGTTACAGTTGAAGTATCTCCTTTAAGTGTCACTAGTGTCACAAATGGGTCACATTCTGAAGCCACTTCAGAGCAATC
ACAGCAGAACAGTACACAAGACTCTGGACCACAGGAAAGTGAAATTTCAGCAGAAAATATCTTAACTGTAGCCAAGGATC
CAAGATATGCCAGATATCTTGAAATGGTTCAAGTGGGTGTTCCAGTGATGGCAATAAGAAACAAAAGGATATCAGAAGGA
CTAGACCCAGATCTTCTTGAGAGACCAGATGCTCCAGTGCCTAATGGCAAGAGTGAAAAAACTGCAAAAGAAAGTTCAGA
TAGTGAATCTTCTTTTAGTGAC

ORF - retro_ogar_3267 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.33 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLAGLSLRIQQIETTLNILD
MDED.LPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHT.QFLN.FSTVCEEKLAGLSLRIQQIETTLNILD
RetrocopyMDEDRLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTMQFLNHFSTVCEEKLAGLSLRIQQIETTLNILD
ParentalAKLSSIPGLDDVTVEVSPLSVTGVTNGSHSEATSEQSQQNSTQDSGPQESEVSAENILTVAKDPRYARYL
AKLSSI.GLDDVTVEVSPLSVT.VTNGSHSEATSEQSQQNSTQDSGPQESE.SAENILTVAKDPRYARYL
RetrocopyAKLSSILGLDDVTVEVSPLSVTSVTNGSHSEATSEQSQQNSTQDSGPQESEISAENILTVAKDPRYARYL
ParentalKMVQVGVPVMAIRNKMISEGLDPDLLERPEAPVPNGKSEKTTEESSDSESSFSD
.MVQVGVPVMAIRNK.ISEGLDPDLLERP.APVPNGKSEKT..ESSDSESSFSD
RetrocopyEMVQVGVPVMAIRNKRISEGLDPDLLERPDAPVPNGKSEKTAKESSDSESSFSD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide