RetrogeneDB ID:

retro_ogar_3206

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873741.1:72281..72825(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CHAC1
Ensembl ID:ENSOGAG00000024541
Aliases:None
Description:ChaC, cation transport regulator homolog 1 (E. coli) [Source:HGNC Symbol;Acc:28680]


Retrocopy-Parental alignment summary:






>retro_ogar_3206
GAGCTGCAGCGGCCAAGAGGTGCCAGGCCAGGCAGGAGCGTCCGTCGGTCCTTCGGGGGCCCAAGCTGGAGTCCGCCCCA
GAGGCGGAGGCCGCCTGGCCCATCCCTGAGCCCGGCACCAGGAAGCAGAGAGCCGCGAACACCTGCCCGCATCACTGTCC
CCTCCGACCTCCGCTCCGCACCCCCGGGACCATTGCGATTCTTTGTGGATTTTCTGGTACAGCTCCCAGGTGTGCAGGCC
CGACTGCGCTTATAGCGACAGCCGAGTGGGTTTCGCGCGGTTATGGCGGCCGTTTCTGGCCAGGAGACACCTTCCATCGG
GGCAGCCACCAGATGCCTGGCCGTGTGGTGACTCTCCTTGAAGGTCATAAGGGCAGCTTTTGGGGTGTGGCATACCAAGG
GCAAGGTGAGCAAGGGAGCGAGGCTCTCAAGTCCCTGACTGTGCGGGAGGCAGTTCTCGGCGCTTAGGATGCCAAAGAAG
GCACTTTCTATCCCCAAGATACCCCTGACCAACCACGGAGGCATTGGCCTATGTGTGGCCACCC

ORF - retro_ogar_3206 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.78 %
Parental protein coverage: 70.38 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalQLERPSGARPGVSVRRSFRAHAGDRP--RRPPGPIPEPGTMKQESAAPNTP-PTSPSPPTSAPHPRDDSD
.L.RP.GARPG.SVRRSF.......P..RRPPGP...P.....E...P.TP.P.S.SPPTSAPHPRD..D
RetrocopyELQRPRGARPGRSVRRSFGGPSWSPPQRRRPPGPSLSPAPGSRE---PRTP>PASLSPPTSAPHPRDHCD
ParentalSLWIFGYGSLVWRPDFAYSDSRV-GF-VRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHKGCTWGVAYQV
SLWIF.Y.S.V.RPD.AYSDSRV.GF..RGY..RFW.GDTFHRGS..MPGRVVTLLE.HKG..WGVAYQ.
RetrocopySLWIFWYSSQVCRPDCAYSDSRV<GF<SRGYGGRFWPGDTFHRGSHQMPGRVVTLLEGHKGSFWGVAYQG
ParentalQGEQVSEALKYLNVREAVLGGYDTKEVTFYPQDTPDQP-LKALAYVATP
QGEQ.SEALK.L.VREAVLG..D.KE.TFYPQDTPDQP...ALAYV..P
RetrocopyQGEQGSEALKSLTVREAVLGA*DAKEGTFYPQDTPDQP<TEALAYVWPP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide