RetrogeneDB ID: retro_ogar_313

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: AAQR03198438.1:1..430(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MPHOSPH10
• Ensembl ID: ENSOGAG00000003177
• Aliases: None
• Description: M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:HGNC Symbol;Acc:7213]

Sequence

>retro_ogar_313
ATGGCACCTGTGATAACGGAGGAAACCACCCTTCAGCTAGAAGATATCATTAAACAAAGGATAAGAGATCAGGCTTGGGA
TGATGTCGTACGTAAAGAGAAACCTAAAGAGGATGCGTATGAGTATAAAAAGCGTCTAACCTTAGACCACGAGAAGAGTA
AATTGAGCCTTGCTGAAATTTACGAACAGGAATACCTCAAACTCAACCAGCAAAAAACAGAAGAAGAAGAAAATCCAGAG
CATGTAGAAATTCAGAAGATGATGGATTCCCTCTTCTTAAAATTGGACGCCCTCTCAAACTTCCACTTCATCCCTAAACC
CCCCGTACCAGAGATTAAGGTTATGTCAAATCTACCAGCCATCACCATGGAGGAAGTGGCCCCCGTGAGTGTTAGCGATG
CAACTCTGCTGGCCCCGGAGGAGATCAAG

Alignment

ORF - retro_ogar_313 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.3 %
• Parental protein coverage: 74.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LAPVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYLKLNQ
          .APVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYLKLNQ
Retrocopy MAPVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYLKLNQ

Parental  QKTEEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVMSNLPAITMEEVAPVSVSDATLLAPE
          QKTEEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVMSNLPAITMEEVAPVSVSDATLLAPE
Retrocopy QKTEEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVMSNLPAITMEEVAPVSVSDATLLAPE

Parental  EIK
          EIK
Retrocopy EIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_313 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009854	1 retrocopy	retro_btau_1333,
Echinops telfairi	ENSETEG00000016641	1 retrocopy	retro_etel_1387,
Otolemur garnettii	ENSOGAG00000003177	1 retrocopy	retro_ogar_313 ,