RetrogeneDB ID:

retro_ogar_3109

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873720.1:1265843..1266403(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSOGAG00000010098
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_ogar_3109
GAATCCCTGGAGGAGGTCTAGCTCTACTTCCTGCCCATCAAGGAGTCTGAGATCATTGACATTTTCCTGGGCACATCTCT
CAAGGACGAGGTTTTGAAGATTATGGCGGTACAAAAGCAGGCCCGCTTTAGCAAGTAGACCAGGTTCAAGGTGTTTGTTG
CTATTGGGGATTATAGTGGCCATGTCAGTGTAGGTGTTAAGTGCTCCAAGGAGGTGACCACTGCCATCTGAGGGACTATG
ATCCCATCTAAGATCTCCATTGTCCCAGTGTGGAGAGGCTACTGAGGGAACAAGATGGGCAGGTACCACACTGTTCTTGC
AAGGTGCCAGGTAGCTGCACCTCTGAGCTGGTACGTCTCATCCTTGCCCCTAGAGGAACAGGCATCGTCTCAGACCATGT
GCCTAAGAAGCTGCCAATAATGGCTGGTATCAATGACTACCATACCTCAGCCAGGAGCTGCATTGTCACCCTAGGCAACT
TTGCTAAGGCTAGTTTTGATGCCATGTCCTAGACCTTTAGCTATGTGATTCCAGACCTCTGGAAAGAGACTGTATTCACC

ORF - retro_ogar_3109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.34 %
Parental protein coverage: 63.82 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSK
.SLEE..L..LPIKESEIID.FLG.SLKDEVLKIM.VQKQ.R....TRFK.FVAIGDY.GHV..GVKCSK
RetrocopyESLEEV*LYFLPIKESEIIDIFLGTSLKDEVLKIMAVQKQARFSK*TRFKVFVAIGDYSGHVSVGVKCSK
ParentalEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV-PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL
EV.TAI.G..I..K.SIVPV.RGY.GNK.G..HTV..CKV.G.C.S.LVRLI.APRGTGIVS..VPKKL.
RetrocopyEVTTAI*GTMIPSKISIVPVWRGY*GNKMGRYHTV<SCKVPGSCTSELVRLILAPRGTGIVSDHVPKKLP
ParentalMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFT
.MAGI.D..TSAR.C..TLGNFAKA.FDA.S.T.SY..PDLWKETVFT
RetrocopyIMAGINDYHTSARSCIVTLGNFAKASFDAMS*TFSYVIPDLWKETVFT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide