RetrogeneDB ID: retro_ogar_2929

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873682.1:4062355..4063411(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRMT1
• Ensembl ID: ENSOGAG00000011938
• Aliases: None
• Description: protein arginine methyltransferase 1 [Source:HGNC Symbol;Acc:5187]

Sequence

>retro_ogar_2929
ATGGCGGCAGCCCAGCGCGTGAACTGCATCCTGGAGGTTTCCTGTGGCCAGGCGGAAAGCAGCGAGAAGCCCAATGCTGA
GGACATGACGTCCAAAGATTACTACTTCGACTCTTACACCCACTTTGGCATCCATTAGGAGATGCTGAAGGATGAGGTGT
GCACCCTCACCTACCGTAACTCCATGTTTCACAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTAGGCTCGGGC
ACAGGGATCCTCTGCATGTTTGCTGCCAAGGCTGGGGCCCATAAGGTTATCAGGATCGAGTGTTCCAGAATCTCTGATTA
TGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCATGTGGTGACCATCATCAAGGGGAAGGTGGAGGAAGTGGAGCTGC
CGGTGGAAAAGGTGGACATCATCATCATTGAGTGAATGGGCTACTGCCTTTTCTACGAGTCCATGCTCAGCACCGTGCTA
TATGCCCGAGACAAGTGGCTGGCGCCTGATGGCCTCATCTTCCCAGACCGAGCCACACTGTATGTAACAGCTATTGAGGA
CCAACAGTACAAAGACTACAAGATCCACTGGTGGGAGAACGTGTACGGCTTTGATATGTCCTGCATCAAAGATGTGGCCA
TCAAGCCCCTAGTGGACGTGGTGGACCCCAAGCAGCTGGTCACTAATGCCTGCCTCATAAAGGAGGTGGACATCTACACT
GTCAAGGTGGAAGGCCTGACCTTCACTTCTCTCGTCTGTCTGCAAGTGAAGCGGAATGACTACGTGCACGCCCTGGTGGC
TTACTTCAACATCGAGTTCACCCGCTGCCACAAGAGGACCGGCTTCTCTACCAGCCCCGAGCCCCCATACACACACTGGA
AGGAGACATTGTTCTACATGGAGGACTACCTGACAGTGAAGACTGGCGAGGAGATCTTTGGCACCATAGGCATGCGGCCC
AATGCCAAGAACAATCGGGACCTGGACTTTACCATTGACCTGGACTTCAAGGGCCAGCTGTGTGAGCTGTCCTGCTCCAT
TGACTACCGGATGCGC

Alignment

ORF - retro_ogar_2929 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.77 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAAEPANCIMEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFK
          MAAA...NCI.EVSCGQAESSEKPNAEDMTSKDYYFDSY.HFGIH.EMLKDEV.TLTYRNSMFHNRHLFK
Retrocopy MAAAQRVNCILEVSCGQAESSEKPNAEDMTSKDYYFDSYTHFGIH*EMLKDEVCTLTYRNSMFHNRHLFK

Parental  DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI
          DKVVLDVGSGTGILCMFAAKAGA.KVI.IECS.ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI
Retrocopy DKVVLDVGSGTGILCMFAAKAGAHKVIRIECSRISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI

Parental  IISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIK
          II.E.MGYCLFYESML.TVLYARDKWLAPDGLIFPDRATLYVTAIED.QYKDYKIHWWENVYGFDMSCIK
Retrocopy IIIE*MGYCLFYESMLSTVLYARDKWLAPDGLIFPDRATLYVTAIEDQQYKDYKIHWWENVYGFDMSCIK

Parental  DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKR
          DVAIK.PLVDVVDPKQLVTNACLIKEVDIYTVKVE.LTFTS..CLQVKRNDYVHALVAYFNIEFTRCHKR
Retrocopy DVAIK-PLVDVVDPKQLVTNACLIKEVDIYTVKVEGLTFTSLVCLQVKRNDYVHALVAYFNIEFTRCHKR

Parental  TGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDY
          TGFSTSPE.PYTHWK.T.FYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS.DY
Retrocopy TGFSTSPEPPYTHWKETLFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSIDY

Parental  RMR
          RMR
Retrocopy RMR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2929 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000003670	3 retrocopies	retro_cjac_1800, retro_cjac_1979, retro_cjac_764,
Danio rerio	ENSDARG00000010246	1 retrocopy	retro_drer_7,
Felis catus	ENSFCAG00000006081	1 retrocopy	retro_fcat_1762,
Homo sapiens	ENSG00000126457	1 retrocopy	retro_hsap_3406,
Gasterosteus aculeatus	ENSGACG00000004897	1 retrocopy	retro_gacu_2,
Gorilla gorilla	ENSGGOG00000000503	1 retrocopy	retro_ggor_2305,
Macaca mulatta	ENSMMUG00000003029	1 retrocopy	retro_mmul_2121,
Otolemur garnettii	ENSOGAG00000011938	2 retrocopies	retro_ogar_2471, retro_ogar_2929 ,
Rattus norvegicus	ENSRNOG00000026109	2 retrocopies	retro_rnor_1077, retro_rnor_2668,