RetrogeneDB ID:

retro_ogar_2482

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873627.1:3498214..3498801(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000002711
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2482
GGGAAGCAAAAGAAAACAAGGAAGTATGCAACCATGAAGCGAATGCTTAGTCTCAGGAATCAGAGGCTTAAAGGACAGAT
TGAAACCTAAAAAGAAATAAAAGAAAGATCCCAGCACATTAAAGGAAAGAGAAGTCCCCCAGCACCCTTCCTGCTTATTC
TTCCAATATAATACACAACTGGGCCCACCTGGCCATATCTTGGTTGATACCAACTTTATCAACTTTTCCATTAGAGCCAA
ACTGGACTTAGTGCAGTCAATGATGGACTGTCTGTATGACAAGTGCATTCCTTGTATCACTGACTGTGCAATGGCTGAAA
TTGAGAAATTGGGGCAGAAGTACTGAGTAGCCCTCAAGATTGCCAAGGATCCAAGATTTGAACGATTAACTTGCACACAC
AAAGGAACCTATGGAGATGACTGCTTAGCACAGAGAGTAACTCAGCACAAGTGTTACATCATGGCCACAGTTGACCCAGA
CCTTAAACGAAGAATCCAAAAAAATCCCTGGAGTTCCTATCATGTATATTTCTAACCACAGATACAATATTGAATGAATG
CCAGATGATTATGGAGCCCCTCAGTTC

ORF - retro_ogar_2482 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.43 %
Parental protein coverage: 99.49 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGKQKKTRKYATMKRMLSLRDQR-LKEKDRLKPKKKEKKDPSTLKEREVPQHPSCLFFQYNTQLGPPYHIL
GKQKKTRKYATMKRMLSLR.QR.LK.....K.K.K...DPSTLKEREVPQHPSCLFFQYNTQLGPP.HIL
RetrocopyGKQKKTRKYATMKRMLSLRNQR>LKDRLKPKKK*KK--DPSTLKEREVPQHPSCLFFQYNTQLGPPGHIL
ParentalVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTY
VDTNFINFSI.AKLDLVQSMMDCLY.KCIPCITDC.MAEIEKLGQKY.VAL.IAKDPRFERL.CTHKGTY
RetrocopyVDTNFINFSIRAKLDLVQSMMDCLYDKCIPCITDCAMAEIEKLGQKY*VALKIAKDPRFERLTCTHKGTY
ParentalADDCLVQRVTQHKCYIVATVDRDLKRRI-RKIPGVPIMYISNHRYNIERMPDDYGAPRF
.DDCL.QRVTQHKCYI.ATVD.DLKRRI..KIPGVPIMYISNHRYNIE.MPDDYGAP.F
RetrocopyGDDCLAQRVTQHKCYIMATVDPDLKRRI>KKIPGVPIMYISNHRYNIE*MPDDYGAPQF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide