RetrogeneDB ID: retro_ogar_2472

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873626.1:5607910..5608236(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SAR1B
• Ensembl ID: ENSOGAG00000013347
• Aliases: None
• Description: SAR1 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10535]

Sequence

>retro_ogar_2472
TGGGATAAGGATCTGCGAGAAATGAAAGGAGTCCAGTTCAGGGACAAGGAAAGACTTTAACAGAGTTAAAGTGAACAGAT
TCACTAATGACAGATGAAACCACTGCTAATGTGCCTGTACTGATTCTTGGGAATAAGACTAACAGACCTAAAGCCATCAG
TGAAGAGAGATTACAAGAGATGTTTGGCTTATATAGTCAGACAACAAGAAAGGGCAGTGTATCTCTGAAAGCATTAAATG
CCCGACCCTTGGAAGTTTTTATGTGCAGTGTGCTCAAAAGACAAGATTCTGGAGAGGGCTTCCATTGGATGGCGCAGTAC
ACTGAC

Alignment

ORF - retro_ogar_2472 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.3 %
• Parental protein coverage: 63.13 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  WKNYLPAINGIVFLVDCADHERLLESKEE-LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY
          W...L....G..F.....D.ERL..S..E..DSLMTDET.ANVP.LILGNK..RP.AISEERL.EMFGLY
Retrocopy WDKDLREMKGVQF----RDKERL*QS*SE<TDSLMTDETTANVPVLILGNKTNRPKAISEERLQEMFGLY

Parental  GQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID
          .QTT.KGS.SLK.LNARPLEVFMCSVLKRQ..GEGF.WMAQY.D
Retrocopy SQTTRKGSVSLKALNARPLEVFMCSVLKRQDSGEGFHWMAQYTD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2472 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013784	3 retrocopies	retro_dnov_1584, retro_dnov_1804, retro_dnov_919,
Loxodonta africana	ENSLAFG00000001021	1 retrocopy	retro_lafr_1043,
Otolemur garnettii	ENSOGAG00000005040	3 retrocopies	retro_ogar_1447, retro_ogar_1981, retro_ogar_2467,
Otolemur garnettii	ENSOGAG00000013347	1 retrocopy	retro_ogar_2472 ,
Ictidomys tridecemlineatus	ENSSTOG00000011326	1 retrocopy	retro_itri_1714,