RetrogeneDB ID: retro_ogar_2437

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873623.1:7640397..7641079(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000034532
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008605
• Aliases: None
• Description: None

Sequence

>retro_ogar_2437
CGACAGTTGATTATTGTCCATGGCCCACCAGAGGCCAGTCAAGATCTGGCTGAGTGCTGCCGTGCATTTGGTGGGAAAGA
TATTAAAGTGTACATGCCAAAGCTGCATGAAACAGTTGATGCCACTAGTGAAACACACATCTATCAGGTGAGATTAAAAG
ACTCACTGGTCAGCTCCCAGCTTTTGTAAAGCCAAAGATGCTGAATTAGCTTGGATAGATGGTGTCTTAGACATGAGAGT
TTCCAAAGTGGACACCGGAGTTATTTTAGAAGAAGGAGAACTGAAGGATGATGGAGAAGACTCAGAAATGCAAGTAGATG
CTCCTTCAGATTCTAGCGTTATAGCACAACAAAAGGCCATGAAAAGTCTGTTTGGAGATGATGAGAAAGAAACAGGTGAA
GAAAGTGAGATCATTCCTACTTTGGAGCCCTTGCCACCTCATGAGGTTCCTGGACATCAGTCAGTTTTTATGAACGAACC
AAGGCTATCAGACTTCAAGCAAGTTCTTTTATGGAAGAACTTTTATGCTTTTATTCAAGCTGAATTTGTAGGAGGTGTGC
TTGTTTGCAGCAATCAAGTAGCAGTCCGTAGAACGGAAACTGGTCGCATTGGATTAGAAGGCTGCCTTTGTCAAGATTTT
TATAGGATAAGAGACCTTTTATATGAACAATATGCCATTGTG

Alignment

ORF - retro_ogar_2437 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90. %
• Parental protein coverage: 67.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KKIINQMSPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSL-QFCKAK-DA
          ...I....PPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSS...F.K.K.DA
Retrocopy RQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSQ<AFVKPK<DA

Parental  ELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI
          ELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI
Retrocopy ELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI

Parental  IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQA----EFVGGVLVCNNQVAVRRTETGRIGLEG
          IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLL.....A....EFVGGVLVC.NQVAVRRTETGRIGLEG
Retrocopy IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLWKNFYAFIQAEFVGGVLVCSNQVAVRRTETGRIGLEG

Parental  CLCQDFYRIRDLLYEQYAIV
          CLCQDFYRIRDLLYEQYAIV
Retrocopy CLCQDFYRIRDLLYEQYAIV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2437 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000008605	1 retrocopy	retro_ogar_2437 ,