RetrogeneDB ID:

retro_ogar_243

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873770.1:425707..426319(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000030416
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000002850
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_243
ATGTTCATCCTGGTGGAGATGGCGGACACCGTGGGAATCCCACTGTGGCAGTTGGAGAGGAAGCTCAACAACTCCATTGC
CGAGGAGCTGAACAAGAAGTTAACCAACAAGGTTGTGTACAACGTGGGACTCTGCATCTGTCTGTTTGCCATCACCAAAC
TGGAGGATGCCTACGTGTCGCCAGGGGATGACATGTCACACACCAAAGTCCATTTTCCCTATGTGGTCTTCCATCCTTTC
CTGGACGAGATTCTGATTGGGAAGATCAAAGGCTGTAGCCCCGAGGGAGTACACGTCTCTCTAGGGTTCTTCGATGACAT
CCTTATCCCTCCGGAGTCGCTGCAGCAGCCAGCCAAGTTTGACGATGCAGAGCAGGTGTGGGTGTGGGAATATGAGACAG
AGGAAGGAGCACACGACCTGTACATGGACACTGGTGAGGAGATTCACTTCCAGGTCGTGGACCAGAGCTTTGTGGGTACG
TCCCCAACAGGACCCAGCTCGGCTGAGGCTACCACTTCCCGTGAGGAGCTGCCGAAGAAGGAGGCCCCATACGCACTGGT
GGGATCCATCAGTGAGCCAGGCCTGGGCCACCTTTCCTGGTGGACCAGCAGT

ORF - retro_ogar_243 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKV
MF.LVEM.DTV.IP.WQ.ERKLN.SIAEELNKKL.NKVVYNVGLCICLF.ITKLEDAYV.PGD..SHTKV
RetrocopyMFILVEMADTVGIPLWQLERKLNNSIAEELNKKLTNKVVYNVGLCICLFAITKLEDAYVSPGDDMSHTKV
ParentalHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL
HF.YVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL
RetrocopyHFPYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL
ParentalYMDTGEEIRFRVVDESFVDTSPTGPSSAEATTSSEEQPKKEAPYTLVGSISEPGLGLLSWWTSS
YMDTGEEI.F.VVD.SFV.TSPTGPSSAEATTS.EE.PKKEAPY.LVGSISEPGLG.LSWWTSS
RetrocopyYMDTGEEIHFQVVDQSFVGTSPTGPSSAEATTSREELPKKEAPYALVGSISEPGLGHLSWWTSS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide