RetrogeneDB ID: retro_ogar_241

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:4910634..4911327(+)
• Located in intron of: ENSOGAG00000008687

Retrocopy information

• Ensembl ID: ENSOGAG00000029517
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016504
• Aliases: None
• Description: None

Sequence

>retro_ogar_241
ATGGCGGAATACTTGGCTTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCGTTTTATTTCAAAATTGGAGCTTG
TCGTCATGGAGACCGGTGCTCTCGGTTGCACAATAAACCGACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCTCAGTCTGCCGACGGCTTGCGCTGTACCGTCAGCGATGTCGAGATGCAGGAACACTACGATGAG
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTACGGGGAAGTCGAGGAGATGAACGTCTGTGATAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGGGAAGAGGACGCAGAAAAGGCAGTGATCGACTTGAACAACCGTT
GGTTTAACGGGCAGCCGATCCATGCTGAGCTCTCGCCAGTGACCGACTTCAGGGAGGCCTGCTGCCGGCAGTACGAGATG
GGGGAGTGCACGCGAGGCGGCTTCTGTAACTTCATGCACTTGAAGCCCATTTCCAGAGAGCTGCGCCGCGAGCTGTACGG
ACGCCGGCGCAAGAAGCACAGGTCGAGGTCCCGGTCTCGGGGGCGTCGTTCTCGGTCGAGAGACTGTGGTGGTGGTGGAG
GACGGGAGCGCGACAGGAGACGATCACGAGACCGTGAAAGATCTGGGCGATTC

Alignment

ORF - retro_ogar_241 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.64 %
• Parental protein coverage: 52.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVS
          MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRC.VS
Retrocopy MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCTVS

Parental  DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVMNNR
          DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYV...R
Retrocopy DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_241 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000015558	1 retrocopy	retro_ecab_1081,
Homo sapiens	ENSG00000160201	2 retrocopies	retro_hsap_1478, retro_hsap_790,
Loxodonta africana	ENSLAFG00000011460	1 retrocopy	retro_lafr_1135,
Microcebus murinus	ENSMICG00000013835	1 retrocopy	retro_mmur_614,
Macaca mulatta	ENSMMUG00000022769	2 retrocopies	retro_mmul_1071, retro_mmul_2126,
Mus musculus	ENSMUSG00000061613	3 retrocopies	retro_mmus_1602, retro_mmus_1787, retro_mmus_2955,
Nomascus leucogenys	ENSNLEG00000014737	1 retrocopy	retro_nleu_2382,
Otolemur garnettii	ENSOGAG00000016504	1 retrocopy	retro_ogar_241 ,
Pongo abelii	ENSPPYG00000011463	2 retrocopies	retro_pabe_1227, retro_pabe_703,
Pan troglodytes	ENSPTRG00000013952	2 retrocopies	retro_ptro_1000, retro_ptro_549,
Tupaia belangeri	ENSTBEG00000000453	2 retrocopies	retro_tbel_2115, retro_tbel_963,
Vicugna pacos	ENSVPAG00000002856	1 retrocopy	retro_vpac_489,