RetrogeneDB ID:

retro_ogar_2182

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873600.1:4012..4834(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000026402
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:GOT2
Ensembl ID:ENSOGAG00000000551
Aliases:None
Description:glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433]


Retrocopy-Parental alignment summary:






>retro_ogar_2182
CTCAACCAACCTAGGGAAATCACACACCTACCTATCTTTAGAGATGCTGGCATGCAGCTCCAAGGTTATCAATACTATGA
CCCCAAGACCTGCGGCTTTGACTTTACGAGCACTATGGAGGACATTTCGAAAATACCAGAGCAAAGTGTTCTTCTCCTGC
ATGCCTGTGCCCATAATCCCACAGGAGTGGACCCTCGTCTGGAGCAGTGGAAGGAAATAGCTACAGTGGGGAAGAAAAAG
AATCTCTTTGCATTCTTTGACATGGCTTACCAAGGCTTTGCCAGTGGTGATGGGATCAAGGATGCTTGGGCTGTGCGCCA
CTTCATTGAACAGGGCATTAATGTTTGTCTCTGCCAATCTTACGCCAAAAACATGGGCTTATATGGTGAGCATGTGGGAG
CTTTCACTGTAATCTGCAAAGACAGAGAGGAAGCCAAAAGGATGGAATCACAGTTGAAGATCTCGATCCGTCCCATGTAC
TCCAATCCTCCTCTAAATGGGGCCCGCATTGCTTCTACCATTCTGACCGCCCTGGATTTGCGAAAACAATGGTTGCAAGA
AGTTGAAGGCATGGCCTACCGCATCATTGACATGCAAACTCAACTGGTCTCTAATCTCAAGAAGGAGGGCTCCTCCCATA
ACTGGCAACACATCACTGACCAGATTGGCATGTTTTGTTTCACAGGGCTAAAGCCTGAACAGGTGGAGAGGCTGACCAAG
GAGTTCTCCATCTACATGACAAAGGATGGCCGGATCTCTGTGGCTGGGGTCACCTCCAGCAATGTTGGCTACCTTGCCCA
TGCCATTCACCAGGTCATTAAG

ORF - retro_ogar_2182 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.51 %
Parental protein coverage: 63.72 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAMEDISKIPEQSVLLLHACAHNPTGVDPRPEQW
L..P....H.PIFRDAGMQLQGY.YYDPKTCGFDFT..MEDISKIPEQSVLLLHACAHNPTGVDPR.EQW
RetrocopyLNQPREITHLPIFRDAGMQLQGYQYYDPKTCGFDFTSTMEDISKIPEQSVLLLHACAHNPTGVDPRLEQW
ParentalKEIATLVKKKNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVICK
KEIAT..KKKNLFAFFDMAYQGFASGDG.KDAWAVRHFIEQGINVCLCQSYAKNMGLYGE.VGAFTVICK
RetrocopyKEIATVGKKKNLFAFFDMAYQGFASGDGIKDAWAVRHFIEQGINVCLCQSYAKNMGLYGEHVGAFTVICK
ParentalDAEEAKRVESQLKILIRPMYSNPPLNGARIASTILTTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEG
D.EEAKR.ESQLKI.IRPMYSNPPLNGARIASTILT..DLRKQWLQEV.GMA.RII.M.TQLVSNLKKEG
RetrocopyDREEAKRMESQLKISIRPMYSNPPLNGARIASTILTALDLRKQWLQEVEGMAYRIIDMQTQLVSNLKKEG
ParentalSSHSWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVTK
SSH.WQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQV.K
RetrocopySSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSSNVGYLAHAIHQVIK