RetrogeneDB ID: retro_ogar_2155

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873597.1:1283095..1283514(+)
• Located in intron of: ENSOGAG00000013871

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HORMAD2
• Ensembl ID: ENSOGAG00000015658
• Aliases: None
• Description: HORMA domain containing 2 [Source:HGNC Symbol;Acc:28383]

Sequence

>retro_ogar_2155
ACAGTTTTTCCATCTCCAATCACTAATGAGCATGAGTCATTGATAATGGTGAAGAAAACTTCTTGCTACTTCTACCTCAT
ATATAACATATCTAAGGGGACTGTTTCCAGAGAGCTCTTATGGACAGCGCCATTTGGATGACCTCAGCTTAAAAGTCCTC
CGAGAAGACAAAAAATGTCCTGGATCACTGCATATTATTAAATGGATTCAAGGTTGTTTTGATGCTTTGGAAAAGAGACA
CCTACACATGGCAGTACTTACACTTTACACAAATCCTAAGGAACCTGAAAAAGTGACTGAAATATACCAGTTCAAATTCA
AATACACAAAAGAAGGAGCTATCATGGATTTTGACAGCAGCACCACAAGCTTTGAAAGTGGGACAGGCAGTTAAGATTAT
TAAGAAAGCCAGTGTTCTG

Alignment

ORF - retro_ogar_2155 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.78 %
• Parental protein coverage: 54.09 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TVFPSQITNEHESLIMVKK-LFATSISCITYLRGLFPESSYGERHLDDLSLKILREDKKCPGSLHIIKWI
          TVFPS.ITNEHESLIMVKK.L.ATS.S.ITYLRGLFPESSYG.RHLDDLSLK.LREDKKCPGSLHIIKWI
Retrocopy TVFPSPITNEHESLIMVKK>LLATSTSYITYLRGLFPESSYGQRHLDDLSLKVLREDKKCPGSLHIIKWI

Parental  QGCFDALEKRYLQMAVLTLYTNPKEPEKVTEIYQFKFKYTKEGAIMDFDSSTTSFESGTNSED-VKKASV
          QGCFDALEKR.L.MAVLTLYTNPKEPEKVTEIYQFKFKYTKEGAIMDFDSSTTSFESGT.S.D..KKASV
Retrocopy QGCFDALEKRHLHMAVLTLYTNPKEPEKVTEIYQFKFKYTKEGAIMDFDSSTTSFESGTGS*D>IKKASV

Parental  L
          L
Retrocopy L

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2155 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000000213	1 retrocopy	retro_etel_240,
Macaca mulatta	ENSMMUG00000004713	1 retrocopy	retro_mmul_1836,
Otolemur garnettii	ENSOGAG00000005640	1 retrocopy	retro_ogar_1908,
Otolemur garnettii	ENSOGAG00000015658	3 retrocopies	retro_ogar_2155 , retro_ogar_3422, retro_ogar_3438,